Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1783 ATGGGTCGCGAAACTATGTGCCTTCCAACCCCACCAACCACTGCCACCACCACAGTGAACCCAGTGCCGCCACCAGCACCAGCACCACCTACCTCTCTTGCTCCTGGCTTCAGGTTCCACCCAACTGATGAGGAACTCGTTATCTATTACCTCAAGCGCAAGGTTTCTGGCAAAAGCTTCCGATTTGATGCCATATCCGAGGTTGACATATACAGGAGCGAACCCTGGGACCTAGCAGATAAGTCAAGGTTGAAGACTAGGGACCAGGAGTGGTATTTTTTCAGTGCACTGGACAAGAAATATGGGAATGGTGGGAGGATGAACAGGGCTACCAGCAAAGGGTACTGGAAAGCCACTGGGAATGATCGACCAGTGAGGCATGACCAAAGGACCGTGGGGCTGAAGAAAACGTTGGTGTTTCATAGTGGCAGAGCTCCTGATGGGAAAAGGACTAACTGGGTCATGCATGAGTACAGGCTTGTTGAAGAGGAGCTTGAGAGGGCTGGGTCTGGATCCTCTCAGCCTCAGGATGCGTATGTTTTGTGTAGAGTGTTTCACAAAAATAACATAGGACCCCCAAATGGGCAACGGTATGCGCCCTTCATTGAAGAAGAGTGGGATGACGCATCGGGAATGGTTCCAGGGGCAGACCCTGGGGATAACCGCTCTTTTGCCCACCAACCACATGTTGAAGGCAAAAGTGGTGTTTTATGCGCCGAAGGGAGAAATGGTGCTTTGCAGGACACTCAATCTTTCAACAAAGCTCCTTTTGATGTGAACAAGCTTCCTATAGAAACTCAAAATCTTCTAGCTGTGTGCAAGAGGGAAAGCATGGCTGAGTATCCATCACCCGAAAAGGATGATAATAATTGTAAGCACATGGATGACTACCCTTCACCTCAAACAGATAATCCAAAGCCTTTCTCTCAAATATACAAACGAAGGCGGCATAACTTGAACTCCAACAACTCTCATGTTTCTGGAGATTCAATCCGAACCAGCCAGGATCCGTGCTCCTCTACAATAACTACTGCTGCAACTGCACTCCCAACCACTAATGCTGCTGCTGGCACAGCCACCAACACTGCACCGAAAAAACATTTTCTTTCCGCACTGGTGGAGTTTTCGCTGCTAGAGTCCCTTGAATCAAAGGACAGCCTTGCTTCAATTAAGACACCGGATTTTGACGTGGAAAATCTTGAGTCATCCATGCCTCCAAGCTGCGCAAAGTTCATCAAGGAAATGAAGAGTGAGATGCAGAAGCTTTCAGTTGAAAAGGAGACGATGAGGTTTGAGATGATGAGCACACAAGCAATGATTAACATTCTCCAGTCTCGCGTCGACGTTCTCAGCAAAGAAAATGAGGATTTGAAGAGGATGGTGGCCCAAAATCCTTAG 1398 0.4814 MGRETMCLPTPPTTATTTVNPVPPPAPAPPTSLAPGFRFHPTDEELVIYYLKRKVSGKSFRFDAISEVDIYRSEPWDLADKSRLKTRDQEWYFFSALDKKYGNGGRMNRATSKGYWKATGNDRPVRHDQRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRLVEEELERAGSGSSQPQDAYVLCRVFHKNNIGPPNGQRYAPFIEEEWDDASGMVPGADPGDNRSFAHQPHVEGKSGVLCAEGRNGALQDTQSFNKAPFDVNKLPIETQNLLAVCKRESMAEYPSPEKDDNNCKHMDDYPSPQTDNPKPFSQIYKRRRHNLNSNNSHVSGDSIRTSQDPCSSTITTAATALPTTNAAAGTATNTAPKKHFLSALVEFSLLESLESKDSLASIKTPDFDVENLESSMPPSCAKFIKEMKSEMQKLSVEKETMRFEMMSTQAMINILQSRVDVLSKENEDLKRMVAQNP* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1783 465 MobiDBLite consensus disorder prediction 280 294 - -
Gso10g1783 465 ProSiteProfiles NAC domain profile. 33 187 IPR003441 GO:0003677|GO:0006355
Gso10g1783 465 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 25 462 - -
Gso10g1783 465 Coils Coil 440 460 - -
Gso10g1783 465 SUPERFAMILY NAC domain 29 188 IPR036093 GO:0003677|GO:0006355
Gso10g1783 465 PANTHER NAC DOMAIN-CONTAINING PROTEIN 78-LIKE 25 462 - -
Gso10g1783 465 Gene3D NAC domain 42 190 IPR036093 GO:0003677|GO:0006355
Gso10g1783 465 Coils Coil 412 432 - -
Gso10g1783 465 MobiDBLite consensus disorder prediction 280 308 - -
Gso10g1783 465 MobiDBLite consensus disorder prediction 1 29 - -
Gso10g1783 465 Pfam No apical meristem (NAM) protein 35 160 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1783 Gso-Chr10 44434894 44441162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1783 1 459 NAC Transcription Factor Family AT3G10480 43.739 5.94e-116 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso10g1783 NAM 3.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1783 - - gmx:100782028 853.588