Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1780 ATGGTGTCAGAAAGAACCAACATGGAAGCACCAGAAGAACTCTCTTTTGGGGGCTCCAAAGATCACACCAACATTGCCAAAGGAAAAAGAACCAAAAGGGTAAGGCCACAATCTCCTATTCCCTTCTCCATCACCGCCAATTCTTCCACCGGAGGAGAAAAAGAAGAAGGTTGCTACAATGTTGATGATGACAACAACAACAACATCATAAAAAATGAAGATATTAACAACAACAACATCAATAACATCAACAGCACTCCCACCACTTCTGCAGAATTACAAGACATCACAGATGAAGAGGAGGACATGGCGAATTGCCTCATCCTTTTAGCACAAGGGCAATCCCGGGAATCCCCGAAACACGCCGAGGAAGACGCCGGCATGAGCTACGCCAAGCACAACAGTAGGAAATTCTTGGAAGCTGCTACCTTGGGGTCTAGCAGGGCAGGGTACTATGTCTATGAATGCAAGACATGTAACAGAACCTTCCCTTCATTTCAAGCACTTGGAGGCCACAGGGCAAGTCACAAGAAGCCTAAGGCATTGATGGCTATTGGCCAAAAGAAAAAACAGCAACATCTTTTGTCATCAGATGAGGAAGAGTTTCAATTGAAGACCAATAAGTCACCATTTTCCATTCAATTGAATACAAATGGGAATTTGTACAGCAGCAGCAGCAACAACAACAACAAGTCCAAGGTGCATGAGTGTTCCATCTGTGGTGCTGAATTCACATCAGGACAGGCATTGGGAGGCCACATGAGACGCCACCGCGCTCCGGTCGGAACCACCCCCACCGCCACCATACTCTCCTTCACCCCGTTGGCTTTGGAACCAGAAGAAGATCACCCCAGAAAGAAAAGGAATGTGTTGAATTTGGATTTGGATCTCAACCTTCCTGCCCCTGAAGATGATCATAGAGAATCCAAGTTTGCCTTTGCATCCAAGCAACAACAACAACAACATGGACAGAAACAACCACAACAACATCATCATCCAGAACAAAAACAACAACAGCCACAACAGCAACAAACAAGTCTTGTCTTCCCCGTACCAGCTTTGGTTGATTGTCATTACTAA 1080 0.4546 MVSERTNMEAPEELSFGGSKDHTNIAKGKRTKRVRPQSPIPFSITANSSTGGEKEEGCYNVDDDNNNNIIKNEDINNNNINNINSTPTTSAELQDITDEEEDMANCLILLAQGQSRESPKHAEEDAGMSYAKHNSRKFLEAATLGSSRAGYYVYECKTCNRTFPSFQALGGHRASHKKPKALMAIGQKKKQQHLLSSDEEEFQLKTNKSPFSIQLNTNGNLYSSSSNNNNKSKVHECSICGAEFTSGQALGGHMRRHRAPVGTTPTATILSFTPLALEPEEDHPRKKRNVLNLDLDLNLPAPEDDHRESKFAFASKQQQQQHGQKQPQQHHHPEQKQQQPQQQQTSLVFPVPALVDCHY* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1780 359 SMART c2h2final6 235 257 IPR013087 -
Gso10g1780 359 SMART c2h2final6 154 176 IPR013087 -
Gso10g1780 359 Gene3D Classic Zinc Finger 213 265 - -
Gso10g1780 359 Gene3D Classic Zinc Finger 129 212 - -
Gso10g1780 359 MobiDBLite consensus disorder prediction 1 60 - -
Gso10g1780 359 SUPERFAMILY beta-beta-alpha zinc fingers 153 257 IPR036236 -
Gso10g1780 359 MobiDBLite consensus disorder prediction 298 346 - -
Gso10g1780 359 ProSiteProfiles Zinc finger C2H2 type domain profile. 235 257 IPR013087 -
Gso10g1780 359 ProSitePatterns Zinc finger C2H2 type domain signature. 156 176 IPR013087 -
Gso10g1780 359 PANTHER ZINC FINGER PROTEIN ZAT5 19 359 - -
Gso10g1780 359 MobiDBLite consensus disorder prediction 38 54 - -
Gso10g1780 359 ProSiteProfiles Zinc finger C2H2 type domain profile. 154 181 IPR013087 -
Gso10g1780 359 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 19 359 - -
Gso10g1780 359 ProSitePatterns Zinc finger C2H2 type domain signature. 237 257 IPR013087 -
Gso10g1780 359 Pfam C2H2-type zinc finger 234 260 - -
Gso10g1780 359 Pfam C2H2-type zinc finger 153 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1780 Gso-Chr10 44405525 44407148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1780 8 359 C2H2 Transcription Factor Family AT5G04390 41.775 1.93e-78 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso10g1780 zf-C2H2_6 7.2e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1780 - - gmx:100819786 591.652