Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1757 ATGGCAGGAAACTTCAGATTCACAATGGACCAGAAGGATATTGTTAGATTCTTGACTACAACTATTGATAGTTTCATTCAAGATAGGTTAATCAACAAAGAACAAAGAACCCAACACAAAGAACAGTGTGCAGAGAGGTTGGCAGCTGAAGATGGAAGTTGTGACAAGGACACTGAGGTGGAATACTCTGATCAAGCAGTATTAGCAAATCTGGATTGGGGTATTGAAGCCCTTGAAGAAGCTATCAATACCTATAACATGGAAACTAAGCTTGCAAGGCTAGATTATGCCGAAAAAATGCTGCAAGTGTGTGCAATGTTGAATCCTAAGCAAAAGACTGCTGGAGTGCCAAACTACTACCTCTCAGCTTGGGCACACCTAAATCTATCCTACCTATGGAAGTTGAGGAACAATGTTCAAAATTGTGTTTTCCATGCTCTTGAGATGTTCATTGTTGATCCCTTTTTCTCGCGGATTGATTTTGCTCCTGAACTCTGGAAAAACCTGTTTCTTCCACACATGAGCTCAATTGTGGGGTGGTATTCAGAAGAGAGGCATAGGCTTATGATGGAAGTGATACCTGACTCTTCTGATTTGTCCTTTACAGCTGACTTTGATCAATTTTTCAATGAGTCTTTGGTATTTTCTATGAGGCCACATCAATTAGACAAGTTGCAAAAGATGGAGCAGCTCTATGGAGAATCCTTGGATGAGAACACACGACTATACGCAAAATATTATAAGGATTGCATGAATTCTGATTCCACTTCAGGCAAGAAGGTGGCTCCTATGTTGCCTATTGCTGAGCCACCAATGACTCCTATGCATGAGTTGAGCCGGTCTGTTCCTGATTTTGTAAAATTTGGTCCTATTTTGCCCAAGAGTGCTGGCTTTTCTTTGACACCAAGATCTAAAGATGGTGTAAATGAAACAATCAGAGATAATTCAACTTCCAGCCATTCAAAGGTGGAGAAATCATCCATATGGGGTGCTAAGGAGAGTATCGTGAAAGAGAATGAGAATGAAGAGGATTTAGATTCTGAGCTTGATGATGCTTCAATGGATTCAGATAACAAAAACAATATTTTCTCGCCAGAAATGAAGATGGTCAAGGATGAGGATATCGAAGCAATGGCGCCTCTATCAAACCAGAAGAATCAATTTCATTCTCCTGATATCTTCTCTCCCTTGGGTTCCCCAAGAACTGGACCAAATAATTCATCTACAAATCCTGATACAAACAGTAAAAGAGAACCCAAGTATCTTCGCTTACTGTCTACTCGTTTGAGGGACTCAACTATTTCTGATCATCTATCTCTGGACATGAGCAAAGATCATATATTAAACTCTGATAACGAAGTAATGGCTTTGAAGAATACTCAGAGGAAAAACAATAACCAAACACTCAGTATGAATGATGACAATGAGAATAGCCAAGGACTAAATGACAGTTCCCTTTGTGAAAGTGACGAGGGAAATCAAAGCTGCATTTCGCTGCCGAAATTGATGATTGGATCAAAACCACCCAAAGACTTTGTTTGCCCAATCACAGGTCAGATATTTTGTGATCCTGTCACCCTTGAAACTGGCCAGACCTATGAAAGAAAAGCAATTCAAGAGTGGCTCAGAACCGGAAACACAACATGCCCCATTACGCGGCAGCCTCTATCTGCAAATACGTTGCCCAAAACAAACTATGTTTTGAAGAGATTGATAACATCATGGAAAGAACAGAATCCTGAGCTAGCGCAAGAATTCTCGAATGCTAACACGCCAAGGGGTTCTTCTTGTTCTCCATCTGCAAAAGACTTCTCAATGCTCTCCACTACACAAAGAATAACTGATTCACCAAGTCTTAAGGGCAAAGAAAATTACATTAGACAAAGGAGCAACAGATTTATGCGTGTCGCAACATCTCCAACTAGTGTGCTGACTCAAGCTGCAGTTGAAACAATTATGAATTCCTTGAAACCTTACATTTCAAGTCTTTGTACATCAGAAAACTTGCACGAATGTGAAGAAGCTGTATTGGAAATAGCAAGATTATGGAAAGATTCAAAGACTGACCCTCAGATTCATGCTTATTTATCAAAGCCAACTATCATAAGTGGTTTGATGGAAATACTTTCAGCTTCTCTGAATAGAGAAGTTTTAAGAACATCAATTTATATTCTTTCTGAGCTAATCTTTATAGATGAAAGAGTTGGAGAAACGCTTAACAGTGTAGATTCTGACTTTGATTGCTTGGCTACTCTACTTAAGAATGGTTTGGCTGAGGCTGCTCTTCTTATTTACCAACTAAGGCCAGTTTTTGCTCAGCTTTCTGCGCATGAACTTATACCATCTCTTGTGGAAGTGATTCGGAACAAAAATGAGGGGTCAGATGATTTTCAGTTAGTTTTAGACCCCAGAGATGCTGCCATAGCAATTCTTGAGCAAATTTTAATAGGAGGGGATGAATATAGCAGGTCCCTTAATGCTTTGAGTGTTGTTTCTGAAAATGGTATTCCAGCCTTAGTGAAGTATTTGGAGAGGATGGAAGGAAGGAGGTCTGTTGTTTCCATACTTTTGTGTTGTATGCAAGCTGAAAAAGGTTGCAAGAGCTTGATAGCAAACAAAATTGAATTGTCTCCTGTTCTTGAATTATTTCATGCTGGAAACGATAGTGTGAGAGGCATCTGTGTGGAGTTTCTCTCAGAATTGGTTCAATTGAATAGAAGGACAGTCTGCAACCAGATATTACAGACAATCAAGGATGAAGGAGCATTTAGTACGATGCATACATTTCTTGTGTATCTTCAGATGGCTCCAATGGAACATCAGCTTGCTGTTGCCAGTCTTCTTCTTCAGATTGATCTTCTGGTTGAGCCACGAAAGATGAGCATTTACAGGGAAGAAGCTGTAGAGACACTAATTGAAGCACTTTGGCAAAAGGATTTCTCAAATACTCAAATGAAGGCTTTCGATGCTTTAATATTTCTTATTGGACACGTAACTTTGTCGGGAAAGTCATATACTGAAGCTTGGTTGCTCAAGATTGCAGGATTTGAGCAACCTTACAATGCTTTAATTAAGGCGGAGCAGTTGGGGCAGTATGACAATGATTCAATGGAAACAATGGAGGATGAAAAAAATGCTATGAACTCTTGGCAGAGAAGGGTAGCTTTTGTACTTTGCAATCATGAAAATGGTTCAATATTCCAAGCTTTGGAAGAATGCCTAAGGAGTAATTCCTTAAAGATGGCAAAATCTTGCCTTGTTCTTGTCACATGGCTCACACACATGCTCTCTACTTTTCCTGATACCGGCATAAAGGATGTTGCTCGCAAATCCTTGCTTGATGAGCTTATAAATGTCCTGCAGTCATCCAAGAACCTGGAGGAAAAGATCCTAGCTACCCTAGCTTTGAAAAATTTCATAAATGATCCAATTGCTCAAGAAGCACTTAGAGCTTATGCTAAAAGCATCTACAGAATCATGAGGAAGCTGAAGAAATATTCAACAGTAGCTGCTGATATTATGAAAACCTTACTAAACTTAAACTCCGTTGATGTGACAGAGTTGTGGAGTTGTAAAGAAGTTGTTGAGTTAGATTTGAGCTCAAATGGAGAGGTGCTTTGTTTGCTTTATATGAATGGTCAGGTCTTGAGTGGACACTCTGATGGAACTATCAAGGTATGGGATGCAAGAAAGAGAATACCAAGAGTGATTCAAGAAACTCATGAGCACACAAAAGCTGTAACATCTCTTTGTTCTTCAGATGATAGGCTATACAGTGGTTCCTTAGACAAAACCATCCGGGTTTGGACAGTCAAACCAGATGAGATTAAATGCATAGATGTTCATGACGTTAAGGAGCCAGTGTATGAGCTGACGGTCAATGCCAAATTGGCATGCTATGTATCTCAAGGAAGTGGAGTTAAGGTTTTTAATTGGTCAGAGGCTCCAAAGCTCATCAATTTCAACAAATATGTGAAATGCCTTGCTGGTGCTGGAGACAAACTGTATTGTGGCTGCTCTGGTTACAGCATCCAGGAGGTTGACTTGTCCAAAAACACATCCAATTCATTCTTCTCCGGTACAAGGAAGTTGTTGGGAAAACAAACCATACACTCCCTTCGAATTCATGACGGTTTCCTCTTTGCTTGTGGTTCTTCTGTTGATGCAAATGCAGGAAAGATATTTTCACTTTCCTCCAAAATGGTGGTGGGATCACTCTCCACTGGACTTGACATCCATCGCATAGCCATCAACAGTGACTTCATATTTGCTGGCACAAAATTTGGCACCATTGAGGTTTGGCTAAAAGATAAGCTCACCCGGGTTGCTTCAATCAAAATGGCTGGTGGTCACACAAAGATCACATCATTAGTATCAGATGCAGATGGTATGATGCTTTTTGTTGGTTCCTCTGATGGCAAGATCCAGGTTTGGGCTTTGGATTAA 4446 0.4008 MAGNFRFTMDQKDIVRFLTTTIDSFIQDRLINKEQRTQHKEQCAERLAAEDGSCDKDTEVEYSDQAVLANLDWGIEALEEAINTYNMETKLARLDYAEKMLQVCAMLNPKQKTAGVPNYYLSAWAHLNLSYLWKLRNNVQNCVFHALEMFIVDPFFSRIDFAPELWKNLFLPHMSSIVGWYSEERHRLMMEVIPDSSDLSFTADFDQFFNESLVFSMRPHQLDKLQKMEQLYGESLDENTRLYAKYYKDCMNSDSTSGKKVAPMLPIAEPPMTPMHELSRSVPDFVKFGPILPKSAGFSLTPRSKDGVNETIRDNSTSSHSKVEKSSIWGAKESIVKENENEEDLDSELDDASMDSDNKNNIFSPEMKMVKDEDIEAMAPLSNQKNQFHSPDIFSPLGSPRTGPNNSSTNPDTNSKREPKYLRLLSTRLRDSTISDHLSLDMSKDHILNSDNEVMALKNTQRKNNNQTLSMNDDNENSQGLNDSSLCESDEGNQSCISLPKLMIGSKPPKDFVCPITGQIFCDPVTLETGQTYERKAIQEWLRTGNTTCPITRQPLSANTLPKTNYVLKRLITSWKEQNPELAQEFSNANTPRGSSCSPSAKDFSMLSTTQRITDSPSLKGKENYIRQRSNRFMRVATSPTSVLTQAAVETIMNSLKPYISSLCTSENLHECEEAVLEIARLWKDSKTDPQIHAYLSKPTIISGLMEILSASLNREVLRTSIYILSELIFIDERVGETLNSVDSDFDCLATLLKNGLAEAALLIYQLRPVFAQLSAHELIPSLVEVIRNKNEGSDDFQLVLDPRDAAIAILEQILIGGDEYSRSLNALSVVSENGIPALVKYLERMEGRRSVVSILLCCMQAEKGCKSLIANKIELSPVLELFHAGNDSVRGICVEFLSELVQLNRRTVCNQILQTIKDEGAFSTMHTFLVYLQMAPMEHQLAVASLLLQIDLLVEPRKMSIYREEAVETLIEALWQKDFSNTQMKAFDALIFLIGHVTLSGKSYTEAWLLKIAGFEQPYNALIKAEQLGQYDNDSMETMEDEKNAMNSWQRRVAFVLCNHENGSIFQALEECLRSNSLKMAKSCLVLVTWLTHMLSTFPDTGIKDVARKSLLDELINVLQSSKNLEEKILATLALKNFINDPIAQEALRAYAKSIYRIMRKLKKYSTVAADIMKTLLNLNSVDVTELWSCKEVVELDLSSNGEVLCLLYMNGQVLSGHSDGTIKVWDARKRIPRVIQETHEHTKAVTSLCSSDDRLYSGSLDKTIRVWTVKPDEIKCIDVHDVKEPVYELTVNAKLACYVSQGSGVKVFNWSEAPKLINFNKYVKCLAGAGDKLYCGCSGYSIQEVDLSKNTSNSFFSGTRKLLGKQTIHSLRIHDGFLFACGSSVDANAGKIFSLSSKMVVGSLSTGLDIHRIAINSDFIFAGTKFGTIEVWLKDKLTRVASIKMAGGHTKITSLVSDADGMMLFVGSSDGKIQVWALD* 1482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1757 1481 SMART WD40_4 1438 1479 IPR001680 GO:0005515
Gso10g1757 1481 SMART WD40_4 1233 1270 IPR001680 GO:0005515
Gso10g1757 1481 SMART WD40_4 1190 1228 IPR001680 GO:0005515
Gso10g1757 1481 Gene3D - 631 1008 IPR011989 -
Gso10g1757 1481 Gene3D - 1179 1363 IPR015943 GO:0005515
Gso10g1757 1481 Gene3D - 1366 1481 IPR015943 GO:0005515
Gso10g1757 1481 MobiDBLite consensus disorder prediction 462 489 - -
Gso10g1757 1481 SMART Ubox_2 511 575 IPR003613 GO:0004842|GO:0016567
Gso10g1757 1481 Coils Coil 1109 1129 - -
Gso10g1757 1481 MobiDBLite consensus disorder prediction 302 325 - -
Gso10g1757 1481 SUPERFAMILY RING/U-box 507 580 - -
Gso10g1757 1481 MobiDBLite consensus disorder prediction 299 366 - -
Gso10g1757 1481 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 1481 - -
Gso10g1757 1481 CDD RING-Ubox_PUB 512 554 IPR045210 -
Gso10g1757 1481 ProSiteProfiles Trp-Asp (WD) repeats profile. 1240 1272 IPR001680 GO:0005515
Gso10g1757 1481 Pfam WD domain, G-beta repeat 1210 1228 IPR001680 GO:0005515
Gso10g1757 1481 Pfam WD domain, G-beta repeat 1449 1478 IPR001680 GO:0005515
Gso10g1757 1481 Pfam WD domain, G-beta repeat 1241 1269 IPR001680 GO:0005515
Gso10g1757 1481 ProSiteProfiles Trp-Asp (WD) repeats profile. 1447 1481 IPR001680 GO:0005515
Gso10g1757 1481 MobiDBLite consensus disorder prediction 383 419 - -
Gso10g1757 1481 ProSiteProfiles U-box domain profile. 507 582 IPR003613 GO:0004842|GO:0016567
Gso10g1757 1481 MobiDBLite consensus disorder prediction 383 415 - -
Gso10g1757 1481 Pfam U-box domain 509 579 IPR003613 GO:0004842|GO:0016567
Gso10g1757 1481 ProSiteProfiles Trp-Asp (WD) repeats profile. 1215 1228 IPR001680 GO:0005515
Gso10g1757 1481 SUPERFAMILY WD40 repeat-like 1212 1480 IPR036322 GO:0005515
Gso10g1757 1481 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 1481 - -
Gso10g1757 1481 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1240 1272 - -
Gso10g1757 1481 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 501 590 IPR013083 -
Gso10g1757 1481 PRINTS G protein beta WD-40 repeat signature 1215 1229 IPR020472 -
Gso10g1757 1481 PRINTS G protein beta WD-40 repeat signature 1257 1271 IPR020472 -
Gso10g1757 1481 PRINTS G protein beta WD-40 repeat signature 1466 1480 IPR020472 -
Gso10g1757 1481 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1447 1481 - -
Gso10g1757 1481 SUPERFAMILY ARM repeat 652 1167 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1757 Gso-Chr10 44211794 44219833 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1757 509 676 U-box Gene Family AT1G23030 31.953 2.75e-16 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1757 - - gmx:100776142 2904.01