Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1747 ATGGCAACAGGATCAAAGTTTTTGGACAATGCAATTATAAGAGGCCATTCTCACTTTCTCACTGCCTCTAATCATCTTCATGTATTAAAAAGTGGGGCAAACTCATCAATAGCATCATCACCTGAAAACCTTTTCTCATGTTCAAATCCTACTTCAATGAAAGAAGAGGCACCTTTAGCCACTTGGATTAGTCATATCCCTGCAAAGTTCAATGTCCATCAAGACATCAAGAATGGCAAAGAGAAAAACCAATCCAATTCTATCTTCCCAGCCTCAGACACAAAAAACAGCTCCATTCCTCTAAATCTTTTAGAAACTCTCCCACCATTAACCATAGCACCATGTTTTGATGAACCAGTAACTTCCTTAGCATCCTCTTCTGCCATACCAAAATTTCCAAACTTGACTTTGTTTTTGCAGGAACCTTCCTTGGTGTACTCATCAATATCATCCTCAAATATCAAAGGTGGTGAAGTCATGTCAGCAACTTCAGACCCCTCATATCATGTGTCTCAGTTTGTCCAAAACCAGCATCAAGCAGGTAGTGGGGATGCACACAAAATGAACAAGAGCCTATCAAATTCACAGTCCAAGTCTTTCGACGAGAATTGGTTGAGTGCCACTAGGACTCAGCCTATGAAGAATGGTGGAAGAGGCAAGCTGTTTAAAGGTGTGAGGCAAAGACACTGGGGGAAATGGGTAGCTGAGATTAGATTACCAAGAAACAGGACAAGGGTTTGGCTAGGGACTTTCGACACAGCCGAAGACGCCGCCATTGCATATGACACAGCAGCATATATACTAAGAGGCGAGTATGCTCAGTTGAACTTCCCTGACCTCAAGCATGTAATTCAGGCAAATTCTCTAAATGGAACCACTGCTGCACTTGTGGAGGCAAAACTACAAGCAATATCAAAAGGTGGTTCTTCTCATAGGAAGCCAACTGATTCACCACCAGGGTCAAGCAATAAGCACAATGATGAGAATGGCAAATTGAAAAGTATAAGTGGCAAGGATTCATCCATAAGGCTTGGAGCTGAGATAACTGAGAGAAGCAAAAGCACACACCATGAGACATCAGATGTGGAAGGTGTTCAGTTAAGTAGAATGCCCTCCTTAGACATGGACATCATTTGGGATGAACTTTTTGTCTCGAATTCATAA 1164 0.4201 MATGSKFLDNAIIRGHSHFLTASNHLHVLKSGANSSIASSPENLFSCSNPTSMKEEAPLATWISHIPAKFNVHQDIKNGKEKNQSNSIFPASDTKNSSIPLNLLETLPPLTIAPCFDEPVTSLASSSAIPKFPNLTLFLQEPSLVYSSISSSNIKGGEVMSATSDPSYHVSQFVQNQHQAGSGDAHKMNKSLSNSQSKSFDENWLSATRTQPMKNGGRGKLFKGVRQRHWGKWVAEIRLPRNRTRVWLGTFDTAEDAAIAYDTAAYILRGEYAQLNFPDLKHVIQANSLNGTTAALVEAKLQAISKGGSSHRKPTDSPPGSSNKHNDENGKLKSISGKDSSIRLGAEITERSKSTHHETSDVEGVQLSRMPSLDMDIIWDELFVSNS* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1747 387 SMART rav1_2 221 284 IPR001471 GO:0003700|GO:0006355
Gso10g1747 387 CDD AP2 220 280 IPR001471 GO:0003700|GO:0006355
Gso10g1747 387 MobiDBLite consensus disorder prediction 344 363 - -
Gso10g1747 387 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF062 3 386 - -
Gso10g1747 387 ProSiteProfiles AP2/ERF domain profile. 221 278 IPR001471 GO:0003700|GO:0006355
Gso10g1747 387 SUPERFAMILY DNA-binding domain 221 279 IPR016177 GO:0003677
Gso10g1747 387 MobiDBLite consensus disorder prediction 305 367 - -
Gso10g1747 387 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 3 386 - -
Gso10g1747 387 MobiDBLite consensus disorder prediction 308 325 - -
Gso10g1747 387 Pfam AP2 domain 222 270 IPR001471 GO:0003700|GO:0006355
Gso10g1747 387 PRINTS Ethylene responsive element binding protein signature 222 233 IPR001471 GO:0003700|GO:0006355
Gso10g1747 387 PRINTS Ethylene responsive element binding protein signature 244 260 IPR001471 GO:0003700|GO:0006355
Gso10g1747 387 Gene3D AP2/ERF domain 221 279 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1747 Gso-Chr10 44117421 44119179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1747 97 382 AP2-EREBP Transcription Factor Family AT4G13620 44.444 1.31e-70 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso10g1747 AP2 1.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1747 - - gmx:100819431 745.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1597 20 46522898 46524560 Gso10g1747 10 44117421 44119179 GST