Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1733 ATGACTGGTAAAAGTCCAATTACTCAACGGACAGCGAGACATGGCTCACACAAACTGTGCAAATTTGATTTAGCGGATCTAGAATGGACAAATATGATTCCAGAGTGTCCAACATACCACCCATCAGAGTATGAGTTTGAGCATCCTTTAGTTTATCTGCAGAAGATTGCTCCTGAGGCTTCTAAATATGGTATATGCAAAATTGTTTCTCCAATTGCAGCCTCTAACCCAGCTGCTTTTGTCTTAATGAAAGAGAAAAAAGATTTCAAGTTTGAAACAAATGTACAGCCTCTTCGTCTTTCTAAATGGAATGAAAAGGATATAATAACCTTTTCTATGAGAGGCAGAAAATATACATATCATGACTTTGAGGTTCTTGCAAACAAGGCCTTTTTTAGTAGATTTCACAGTTCTAGAGACCTTCCTTCTTCTTATGTGGAAAAGGAATTCTGGCATGAGATGGCTCATGGAGAAAAAGGAACAGTTGAGTACGGAGTCAATGTCGAAGGTAGTGCCTTTTCATGTGATCCTAATGACAGGCTTGGAACAAGCAAATGGAATTTGAAGAATTTTTCACGGCTTCCACAATCCCTGTTACGTTTAGTTGACAGGAAAATTCCCGGAATAACTGATCCTATGCTTTACATTGGGATGCTGTTCAGTATGTTTGCGTGGCATGTTGAAGATCATTATTTGTACAGCATAAACTTTCATCACTCAGGTGCAAATAAAACTTGGTATGGCGTGCCTGGCCATGCAGCATCACAATTTGAAAAGACTGTCTTACAACATGTGTATTGCAATAAGATCATAACAAAACATGGAGAGGATGGAGCTTTCAAGTTTCTAGCACAAAAAACAACCATGTTCCCACCAAACGTCATGTTACAACATGATGTGGCAGTTTACAAGGCTGTACAAAAGCCAGGAGAGTTTATCATCACCTTTCCTAGAGCATATCATGCTGGATTTAGCCATGGTTTTAACTGTGGAGAAGCAGTAAACTTTGCAAATGGTGATTGGTTTCCACTTGGGGCTGCAGCTAGCATGCGTTATACGCATCTCAAAATGATGCCTTTAATTCCATATGAGGAACTTCTTTGTAAAGAGGCAATGTTGGTTTTCAAGTCCTCAAGAGTCAGAAGTTCCAAGAACAAACCTGAAGACAAAACATCTTATCAAGCTATTATGCTGCCTTTTGTGCATCTTGTGCAATCTTATAAGACCTCCCTCCTGCGACTGAACAGTTCAAGAAAGTTGCCTAGTTCTTCAAATACAACAGGTTCTCAGATATGCAGCCTTTGCTACAGGGATTGTTATGTAGCTTACTTCTTGTGCAAGTACTGCTTTTCTCATCCAATTTGTCTTTTCCATGACATTGCACCACAGACGTGTTTATGTGGAAGAGATTATACTATTTTCAAAAGGAATGACATTTTTGCACTGGAAGAAGCTGCAAAAAGTTCTCAACAGGGAAAAGAATGTAATAATCCTTGGCAGAGAGAAAAAAGTGTAAGAGGAACTGCTAGTTCTCTAGGGGCTGCATCTAAACCGAAAACAAAAGTGGCTGACAGCACCAAGCACAGTGTTGAAAGGAATAAGTCAACAATGAAACACTGGAGAAACAATGGGCTTCCATCTGTGAGGGGTACCGAAAGGCCAGGAATCATTTATAACCTGAGAAAAAGCAAATCAAAGTTGATTTAG 1707 0.3948 MTGKSPITQRTARHGSHKLCKFDLADLEWTNMIPECPTYHPSEYEFEHPLVYLQKIAPEASKYGICKIVSPIAASNPAAFVLMKEKKDFKFETNVQPLRLSKWNEKDIITFSMRGRKYTYHDFEVLANKAFFSRFHSSRDLPSSYVEKEFWHEMAHGEKGTVEYGVNVEGSAFSCDPNDRLGTSKWNLKNFSRLPQSLLRLVDRKIPGITDPMLYIGMLFSMFAWHVEDHYLYSINFHHSGANKTWYGVPGHAASQFEKTVLQHVYCNKIITKHGEDGAFKFLAQKTTMFPPNVMLQHDVAVYKAVQKPGEFIITFPRAYHAGFSHGFNCGEAVNFANGDWFPLGAAASMRYTHLKMMPLIPYEELLCKEAMLVFKSSRVRSSKNKPEDKTSYQAIMLPFVHLVQSYKTSLLRLNSSRKLPSSSNTTGSQICSLCYRDCYVAYFLCKYCFSHPICLFHDIAPQTCLCGRDYTIFKRNDIFALEEAAKSSQQGKECNNPWQREKSVRGTASSLGAASKPKTKVADSTKHSVERNKSTMKHWRNNGLPSVRGTERPGIIYNLRKSKSKLI* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1733 568 ProSiteProfiles JmjN domain profile. 36 77 IPR003349 -
Gso10g1733 568 MobiDBLite consensus disorder prediction 506 534 - -
Gso10g1733 568 Pfam JmjC domain, hydroxylase 213 336 IPR003347 -
Gso10g1733 568 ProSiteProfiles JmjC domain profile. 183 353 IPR003347 -
Gso10g1733 568 PANTHER TRANSCRIPTION FACTOR JUMONJI FAMILY PROTEIN 2 568 - -
Gso10g1733 568 PANTHER LYSINE-SPECIFIC DEMETHYLASE 2 568 - -
Gso10g1733 568 SMART JmjN_1 35 76 IPR003349 -
Gso10g1733 568 SMART cupin_9 183 353 IPR003347 -
Gso10g1733 568 Pfam jmjN domain 37 69 IPR003349 -
Gso10g1733 568 Gene3D Cupin 36 398 - -
Gso10g1733 568 SUPERFAMILY Clavaminate synthase-like 185 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1733 Gso-Chr10 44000861 44004697 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1733 33 488 JUMONJI Transcription Factor Family AT2G34880 31.309 1.07e-60 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gso10g1733 JmjC 4.6e-38 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1733 - - gmx:100809650 1179.47