Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1728 ATGGAGCAGGAAGAGCACGAAGTGTACGGTGCAGACATTCCCGACGAGGAGATTGACATGGACGCAGACGCCGAGCAACAAGATGAGCAACTTGCCCCCAATCACACAAACAAGGAACTGGAGGACATGAAGAAGAGGCTGAAGGAGATCGAGGAGGAAGCTAGCGCCCTTCGCGAAATGCAGGCCAAGGTCGAGAAAGAGATGGGCGCTGTTCAAGATTCGTCGGGCACTTCCGCAACTCAAGCTGAAAAGGAGGAAGTGGATGCTCGGTCAATCTATGTTGGTAATGTTGACTATGCATGTACGCCTGAAGAAGTCCAGCAGCATTTTCAGTCCTGTGGAACTGTGAACAGGGTGACAATACTGACAGACAAATTTGGTCAACCAAAAGGGTTTGCTTATGTAGAGTTTGTTGAGATTGATGCCGTGCAGAATGCTCTCCTGTTAAATGAATCAGAATTGCATGGTCGACAACTGAAGGTGTCTGCCAAGCGTACAAATGTTCCTGGAATGAAGCAATATTTTGGAAGAAGACCTGCTGGTTTCCGATCTAGGAGGCCTTTCATGTCTGCTCCATTCTTTCCACCATATGGTTATGGAAGGGTTCCAAGGTATAGAAGACCCACTCGATACAGGCCATACTAG 645 0.4822 MEQEEHEVYGADIPDEEIDMDADAEQQDEQLAPNHTNKELEDMKKRLKEIEEEASALREMQAKVEKEMGAVQDSSGTSATQAEKEEVDARSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYFGRRPAGFRSRRPFMSAPFFPPYGYGRVPRYRRPTRYRPY* 215
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1728 214 Gene3D - 12 172 IPR012677 -
Gso10g1728 214 SMART rrm1_1 91 162 IPR000504 GO:0003723
Gso10g1728 214 PANTHER POLYADENYLATE-BINDING PROTEIN 1-LIKE 3 213 - -
Gso10g1728 214 SUPERFAMILY RNA-binding domain, RBD 80 188 IPR035979 GO:0003676
Gso10g1728 214 MobiDBLite consensus disorder prediction 32 46 - -
Gso10g1728 214 MobiDBLite consensus disorder prediction 66 86 - -
Gso10g1728 214 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 92 160 IPR000504 GO:0003723
Gso10g1728 214 MobiDBLite consensus disorder prediction 1 46 - -
Gso10g1728 214 CDD RRM_II_PABPs 91 162 - -
Gso10g1728 214 Coils Coil 33 67 - -
Gso10g1728 214 MobiDBLite consensus disorder prediction 1 26 - -
Gso10g1728 214 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 90 166 IPR000504 GO:0003723
Gso10g1728 214 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 3 213 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gso10g1728 Gso-Chr10 43962801 43967807 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1728 91 162 Eukaryotic Initiation Factors Gene Family AT2G36660 38.158 4.53e-10 57.0
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1728 K14396 - gmx:100527139 360.533
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1614 20 46716086 46722006 Gso10g1728 10 43962801 43967807 GST