Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1724 ATGTATTGGGAAGTTATGGCAGGAAACATGGGGTGGAGTGTGATAATAGAAGAGGAGGGATGGAGGAAGGGACCTTGGACTTCTGAGGAGGACAGATTGCTCATTCAGTATGTCAAGTTCCATGGTGAAGGCAGATGGAACTCTGTTGCTAGGCTTGCAGGACTGAAAAGAAATGGGAAAAGCTGCAGATTGAGATGGGTGAATTACCTGAGGCCAGACCTCAAGAAGGGTCACATAACACCACAAGAAGAAAGCATAATTCAAGAGCTGCATGCTAGGTGGGGAAACAGGTGGTCAACAATTGCAAGAAGCTTGCCAGGAAGAACTGATAATGAGATAAAGAACTATTGGAGGACTCACTTCAAGAAAAAGACTAAAACCCCCTCTGATGCTGCTGAGAAGGCGAGAATCCGTTCCTCGAGGAGGCAACAATTTCAACAGCAACAGCAGCAGTTGAAGCAGCAGCAGGTTCAGCAGCAGCAACAACAACAACAACAATTCCAATTCAACTTGGACATGAAAGGGATCATAAACTTGCTTGAGGAAAATAACCATAGAGTGCCTTCTATATCTCAAGAGGCACAAGAAATGGCCAGCATGTACCCTAACACTTCAGAACAGCAGGACTACTTCTACTCTATGTTCAATGTCAATGACAATAATGTCTCTGCACCTGAGTGCTTAAACGAAGAAATTTTGTGGGATGGACTGTGGAACTTGGACGATGTTCTTTGCAATTTCAATGCAGCTAGTGCCACAAGCAAAGCTAGTTTACATAATTTAGTTGCTCCTTTCTGTTAA 801 0.4382 MYWEVMAGNMGWSVIIEEEGWRKGPWTSEEDRLLIQYVKFHGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKKGHITPQEESIIQELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKTKTPSDAAEKARIRSSRRQQFQQQQQQLKQQQVQQQQQQQQQFQFNLDMKGIINLLEENNHRVPSISQEAQEMASMYPNTSEQQDYFYSMFNVNDNNVSAPECLNEEILWDGLWNLDDVLCNFNAASATSKASLHNLVAPFC* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1724 266 Gene3D - 80 124 - -
Gso10g1724 266 PANTHER MYB TRANSCRIPTION FACTOR 1 259 - -
Gso10g1724 266 Pfam Myb-like DNA-binding domain 23 70 IPR001005 -
Gso10g1724 266 Pfam Myb-like DNA-binding domain 77 120 IPR001005 -
Gso10g1724 266 ProSiteProfiles Myb-like domain profile. 18 70 IPR001005 -
Gso10g1724 266 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 259 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gso10g1724 266 CDD SANT 80 121 IPR001005 -
Gso10g1724 266 SUPERFAMILY Homeodomain-like 20 117 IPR009057 -
Gso10g1724 266 SMART sant 75 123 IPR001005 -
Gso10g1724 266 SMART sant 22 72 IPR001005 -
Gso10g1724 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 74 IPR017930 -
Gso10g1724 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 125 IPR017930 -
Gso10g1724 266 Gene3D - 23 75 - -
Gso10g1724 266 Coils Coil 142 165 - -
Gso10g1724 266 CDD SANT 25 70 IPR001005 -
Gso10g1724 266 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1724 Gso-Chr10 43940956 43942473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1724 18 266 MYB Transcription Factor Family AT4G13480 54.074 1.82e-83 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso10g1724 Myb_DNA-binding 6.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1724 K09422 - gmx:100813935 509.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1617 20 46741464 46742926 Gso10g1724 10 43940956 43942473 GST