Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1672 ATGAATTCAGAGAAGCCTGTGAGTCCTGAGATTTCAAGTGAAGAAAATGATCATGATCAAGAAGATGACACTGGTGGAACCAAACGCTCTTATGAGTGCACATTCTGCAAAAGAGGCTTCACAAACGCTCAGGCTTTAGGCGGCCATATGAACATCCATAGGAGAGACAGGGCCAAGGCCAAGCAATTCACACTTGATGCTTCACCTTCAGTTAACAAATTCAATAGTAACAACAATGATTCCATGGCCCTTCCCTTTGTCTCAGAAATTATGAACCAACCCACAAGGCCTAATTACTCCCCTTTGGAGTCTCAGATGAACTTTCATCCACCACATGCCTTTTATTATGAGTTTTGTAACTCAAGGTCTCAGCCTTTGAGTTTGAACAACCAAGAGCTTCGGGATGCCAATTTGAGTCTCCAAATTGGTTCAAGTCATGTTGATGATAATATCCATCAAGTTAGGAGAGGAAATCAGAAAGAGAGTGAAGTGGACTTGGAGCTCAGACTTGGCCATGATCCATACTGA 528 0.4261 MNSEKPVSPEISSEENDHDQEDDTGGTKRSYECTFCKRGFTNAQALGGHMNIHRRDRAKAKQFTLDASPSVNKFNSNNNDSMALPFVSEIMNQPTRPNYSPLESQMNFHPPHAFYYEFCNSRSQPLSLNNQELRDANLSLQIGSSHVDDNIHQVRRGNQKESEVDLELRLGHDPY* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1672 175 ProSitePatterns Zinc finger C2H2 type domain signature. 33 53 IPR013087 -
Gso10g1672 175 SMART c2h2final6 31 53 IPR013087 -
Gso10g1672 175 SUPERFAMILY beta-beta-alpha zinc fingers 28 57 IPR036236 -
Gso10g1672 175 MobiDBLite consensus disorder prediction 1 27 - -
Gso10g1672 175 PANTHER OS07G0101800 PROTEIN 12 174 - -
Gso10g1672 175 Pfam C2H2-type zinc finger 31 55 - -
Gso10g1672 175 ProSiteProfiles Zinc finger C2H2 type domain profile. 31 58 IPR013087 -
Gso10g1672 175 Gene3D Classic Zinc Finger 11 83 - -
Gso10g1672 175 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 12 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1672 Gso-Chr10 43334356 43335493 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1672 12 171 C2H2 Transcription Factor Family AT3G09290 35.542 1.15e-17 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso10g1672 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1672 - - gmx:102669921 366.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1670 20 47318444 47319423 Gso10g1672 10 43334356 43335493 GST