Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1671 ATGGCGAAACACGTCATGTCATCATCATGTCCTAAGAAGTACGATATTTTCATCAGCTTCAGAGGTGAGGACATCCGCACCACGTTCATTGGCCATCTTCGTTCTGCTCTCTCTGGACCCAACATCAAAGCATACGCGGATGACCATGACCTTCAAAAAGGACAAGAGATTTGGCCGTCACTGTGCCAAGCAATCCAGGACTCACACTTTGCCATCGTGGTATTCTCCGAAAACTATGCTGAGTCAAAATGGTGCTTGAAAGAACTGGTGCAAATACTGCACTGCAGAAAAACTCAGGGATTGGTAGTCATACCAGTCTTCTACCAAGTAGATCCATCCCACATAAGGAAGTGTACTGGCACTTACGGGGAAGCAATCGCAAAACACAAAGACAACCAATCCGTCCAAGACTGGAAAGCTGCTCTCACTGAAGCTGCCAATATATCTGGATGGGACACTCGTAGCCGTGACAACAAGAATGAGTCTCAACTAATAGAGAAAATTGTGCTAGATGTATCCGAGAAGTTGAGGTCCCCTTTTAAACTAAAAGAAGTAGAAGACTTTGTTCAAATTGAAAAACATTGTGGAGAAGTAAAACTGTTGCTGTCCAAAAACCAAGATCAGTTACAAAAGAATGTTCATGTAATTGGAATTTGGGGTATGGGAGGGATTGGCAAGACAACTATTGCCAAAGCCTTGTTTTCTCAACTCTTTCCACAATATGATGCTGTCTGCTTCTTACCAAATGTTAGAGAGGAATCACAAAGGATGGGACTAACATCTTTGTGTGATAAGCTTCTTTCTAAGCTACTTAAGGAAGGCCATCATGAATATAATCTTGCAGGATCTGAAGACCTTACGAGGAGGCTCGGCAATAAAAAAGTTTTGATTGTACTTGATGATGTGGATAGTTTCAGTCAATTAGATACGTTGTATCAACCATGTAAATATGTAGGTCCAGGTAGTAAACTTATTATAACAACAAGAGATAGGCATTTGCTTAGAAGAAGAGTTGATGTCACACATGTCTATGAGGTCAAGACATGGAGCATTGCTGAATCTCTAGAGCTTTTTAGTGTACATGCCTTCAATGAAAGACGTCCTAAAAAGGGATACGAGGATCTCTCAAACAGGGCGGTAAACTGTGCAAGGGGAGTTCCATTAGCTTTAGAAGTTTTGGGTTCTAATCTTTATTCCAGAACTACAGAATTCTGGGATGATGAATTGAACAAACTTGAGAACTATCGGAATGACAATATTCAAGATGTCTTACAAGTGAGCTATGATGGATTAGACGACCTAGAGAAGGAAATATTTCTAGACATTGCATTCTTTTTCAAAGGTGAACATAAAAAAGATGTCGTAAGAATACTAGATGCTTGTGATTTCTACCCTACTAGGGGATTAAAGGTCCTCGAAGATAAAGCTCTTATAACTATTTCACATTCTGGGATGATAGAAATGCATGACTTGATAGAAGAAATGGGTTTGAATATAGTTCGTGGAGAAAGTAAAGATCCCAGAAACCGTAGTCGATTGAGTGATATAAAAGAAGTTTCTGATGTACTTGCAAATAAAAAGGGAAGTGATTTAATTGAAGGGATAAAATTAGATTTGTCTTCCATTGAGGATTTACACTTGAATGCTGACACACTCAACATGATGACTAATTTAAGAATTCTTAGATTATACGTTCCTTCAGGTAAGATATCAAGAAATGTGCACCATTCTGGTGTCCCTAGTAAATTGTCTGGTAAATTGAGATACCTCGAGTGGAATGGATTCCATTTGAAGTCTCTTCCAGTAACTTTTTGTGCTAAGATGCTTGTTGAGATTCGAATGCCGCACAGCCATGTTACAGAACTTTGGCAGGGGGTGCAGGATGTTGCGAATTTAGTGCGAATTGACTTAAGTGAATGCAAGCACTTGAAGAATCTTCCAGATTTGTCTAAGGCGTCAAAACTTAAATGGGTGAATCTTTCTGGTTGTGAAAGTTTGTGTGATATTCATCCATCTCTTTTTTCTTTTGACACACTTGAAACTTTGATGCTGGATGGATGCAAAAAGCTCAAGGGTCTTAAAAGTGAGAAACATTTAACATCTTTGAGGAAGATCAGTGTCGATGGCTGCACTAGTCTCAAGGAATTCTCCTTGTCATCGGATTCAATCACAAGCTTGGATTTAAGCAGCACAAGAATTGGAATGTTAGACTCTACATTTGAGCGTCTAACAAGTCTTGAGTCACTCAGTGTACACGGTTTGAGATATGGTAATATACCGGATGAGATATTTTCCCTAAAAGATCTTCGGGAGCTTAAGATTTGTAATTCTAGAGTAGCAATTGACAAAGAGAAGCTACATGTGTTATTTGATGGGTCAAGATATCTACGTCTACTACACTTGAAGGATTGTTGTAACTTGTGTGAGCTCCCTGACAACATCGGTGGCTTATCAAAATTAAATGAGCTAAGACTAGATGGTAGCTGTGTGAAGACATTGCCAGCTAGCATCGAGCATCTCAGAAAACTGAAAACTCTGTCCTTAGAGAATTGTAGGGAGCTTGGGAGTCTACCAAAGCTTCCACCATTTATCACAGAGTTTAATGCCGCGAACTGCTGGTCATTGACTACAGTATCCTCTTTAAACTCTTCTGCATTGGGATTGAAAGGGAAGGGCAAATTCATTTCATTCAAGAATTGTGGTTGGCTGGATGAACCTTCACTTCATTGCATTATGGAGGGTGCCCTCGAATTAACCGAGCTTGCGTCGTGTCAAAATGAGATTGTAAAAATCGTAGATGAAGCCAACACCAAAAATTGTAATAATAAATCTGTGAAGGTCTGTTTCCCAGGAAGCAAAGTCCCAAGCCAGTTCAAACATCGAACAACAGACTCCTCAATCACTATTGGTCTTCCATGTTACCGTAATGGCCGTGTGGGATTAACTTTGTGTGTGGTTCTTTCACGCTCCCGGGTTGCTGCTAAAATCTGGTGTCAGTGCTACTTGGCAGATGGCACTAAGTTGGAACCCGCCACTACGTGGTATCATGAAGCTGTCACGGAGTTGAATTCTGATCATGTTTTTATTTGGTGTGATTCAAGCCTGTTTAACAGCATTTTCGAATCGGGTACACCATTGGTTTTCTTTGAGTTCTTTGTTACAAATGATAAGGGGAAACGCGTGACCATCGACACCCCAGAGTGTGGGGTCTGCGTAATGTTTGATTCAAAAGGTTATGTGGCAAGTCGTCAAGTGTTGGAACATAGTGCCAGTGTACTTGGTTTGGAGTTGAATCACTACATGGTGCAACAGAGAAGAAGTGCTATGGCGAAACAAGGCATGTTGTCATCATTGTGTCCTAGAAAGTACCAAGTTTTTATTAGCTTCAGGGGTGAGGATGTCCGCACCAGCTTCATTAGCCATCTTCGTTCTGCTCTCTCCCGGGACAACATCAAAGCATACATGGATGACCACAACCTTCAAAAAGGAGACGAGCTTTGGCCCTCATTGTGCCAAGCAATTCAGGATTCAGAGCTTGCCATCGTCGTATTCTCCGAACACTATGCTGCTTCAAAGTGGTGCTTGAATGAGCTGGTGGAAATACTGCACTGCAGAAAATCTCAGGGCCTGGCAGTGATACCCGTGTTCTACGAAGTGGATCCATCACACATAAGGAAGTATGATGGCACTTGCGGTGAAGCAATCTCAAAATACGAGACATATTTTGGTGACAAAGACAATGAATCCATCCAAAAGTGGAAAGCTGCTCTCGCTGAAGCCGCCCATATATCTGGATGGGACTCTCATAGCCGTGAATACAAGAATGACTCTCAACTGATAGAGAAAATCGTGGTAGATGTATCCGAGAAGTTGAGCCAGGGGACCCCTTTTAAACTAAAAGTAGAAGACTTTGTTCAAATTGAAAAACATTGTGGAGAAGTCAAATTGTTGCTGTCCAAAAACCAAGATCAGTTACAAAAGAATGTTCATGTAATTGGAATTTGGGGCATGGGAGGGATTGGCAAGACAACTATTGCCAAAGCCTTGTTTTCTCAACTCTTTCCGCAATATGATGCTGTCTGCTTCTTACCAAATGTTAGAGAGGAATCAAGAAGAATTGGACTAACATCTTTACGTCATAAGCTACTTTCTGACCTACTTAAGGAAGGTCATCATGAGAGGAGGCTCAGCAATAAAAAAGTTTTGATTGTACTTGATGATGTGGATAGCTTTGATCAATTAGATGAGTTGTGTGAACCATGTAACTATGTAGGTCCAGATAGTAAAGTTATTATAACAACAAGAAATAGGCACTTACTTAGAGGAAGAGTTGATGACAGACATGTCTATGAGGTCAAGACATGGAGCTTTGCCGAATCTCTAGAGCTTTTTAGTTTGCATGCCTTCAATGAAAGACGTCCTAAAAAGGGATACGAGGATCTCTCAAACAGGGCGGTGAACTGTGCAAGGGGAGTTCCATTAGCTTTAAAAGTTTTGGGTTCTAATCTTTATTCCAGAAGTATAAAATTCTGGGACGGTGAATTGAGCAAACTTGAGAACTATCGGAATGACAGTATTCAAGATGTGTTACAAGTGAGCTATGATGGATTACATGACCTAGAGAAGAAAATATTTCTAGATATTGCATTTTTTTTTAAAGGTGAACATAAAGATGATGTCATAAGAATACTAGATGCCTGTGATTTCTACGCTACCAGTGGCATAGAGGTCCTTGAAGACAAAGCTCTTGTGACTCTTTCAAATTCTGGGATGATACAAATGCATGACTTGATACAAGAAATGGGTTTGAATATAGTTCGTGGGGGCAGTGAAGATCCCCGAAACCGTAGTCGATTGCGCGATATAGAAGAAGTTTCAGATGTACTTGAAAATAAAAATGGAAGTGATTTAATTGAAGGGATAAAATTAGATTTGTCTTCGATTGAGGATTTACACTTGAATGCTGACACATTCGACAGGATGACTAATTTAAGAATTCTAAGATTATACGTCCCTTCTGGTAAGAGATCAGGAAACGTGCACCATTCTGGCGTCCTTAGTAAATTGTCTAGTAAATTGAGGTATCTTGAGTGGAATGGATGTCGTTTGAAGTCTCTTCCAAAATCTTTTTGTGGTAAGATGCTTGTTGAGATTTGCATGCCACACAGCCATGTTACAGAACTTTGGCAGGGGGTGCAGGATCTTGCAAATTTAGTGCGAATTGACTTAAGTGAATGCAAGCACTTGAAGAATGTCCCAGACTTGTCCAAGGCGTCAAAACTTAAATGGGTGAATCTTTCTGGTTGTGAAAGTCTGTGTGATATTCATCCATCTGTTTTCTCTCTTGACACACTAGAAACTTCGACACTGGATGGCTGCAAAAATGTCAAGAGCCTTAAAAGTGAGAAACATTTAAGATCTCTGAAGGAGATCAGTGTCATTGGCTGCACTAGTCTGAAGGAATTCTGGGTGTCATCGGATTCAATCAAAGGCTTGGATTTAAGCAGCACAGGGATTGAAATGTTGGACTCTTCAATCGGGCGTCTAACAAAGCTCCGGTCACTCAATGTAGAGGGTTTGAGACATGGTAATCTTCCAAATGAGTTATTCTCCCTAAAATGTCTTCGGGAGCTTAGGATTTGCAATTGTAGACTAGCAATTGACAAAGAGAAGCTACATGTGTTATTCGACGGCTCAAGATCTCTAAGAGTACTACACTTGAAGGATTGTTGCAACCTGAGTGAGCTCCCTGAAAACATTTGGGGCTTATCAAAATTACATGAGCTAAGACTAGATGGTAGCCGTGTGAAGACACTGCCAACTACCATCAAGCATCTCAAGAGACTGAACACTCTGTCATTAAAGAATTGTAGGATGCTTGAGAGTCTGCCAAAGCTTCCCCCGAATGTCCTAGAGTTTATCGCCACGAACTGCAGATCGTTAAGGACAGTGTCAATATCAACTTTAGCAGATTTTGCATTGAGGACAGGGAAGGGCATAATCGTTTCATTGCAGAATTGTAGTAATTTATTGGAATCACCTTCTCTCCACTGCATTATGGAGGATGCTCACTTAGCAACCAAGAGTATAGTGCTTAAAAATATGTTTTTGAAAGAGTTGTTTCGAGGCACAAACACCAGAATTGATAACTATGACTATGTGAAAAGGCAGTTCAAATATCAAACAACACCATACTCCTTAGTCATTGTTGATCTTCCTTCTTCAAAATCAGACTTTGTGGGATTTGTTAGAAATGATAGTAATTCTGACTTTGTTTGTTAA 6282 0.4037 MAKHVMSSSCPKKYDIFISFRGEDIRTTFIGHLRSALSGPNIKAYADDHDLQKGQEIWPSLCQAIQDSHFAIVVFSENYAESKWCLKELVQILHCRKTQGLVVIPVFYQVDPSHIRKCTGTYGEAIAKHKDNQSVQDWKAALTEAANISGWDTRSRDNKNESQLIEKIVLDVSEKLRSPFKLKEVEDFVQIEKHCGEVKLLLSKNQDQLQKNVHVIGIWGMGGIGKTTIAKALFSQLFPQYDAVCFLPNVREESQRMGLTSLCDKLLSKLLKEGHHEYNLAGSEDLTRRLGNKKVLIVLDDVDSFSQLDTLYQPCKYVGPGSKLIITTRDRHLLRRRVDVTHVYEVKTWSIAESLELFSVHAFNERRPKKGYEDLSNRAVNCARGVPLALEVLGSNLYSRTTEFWDDELNKLENYRNDNIQDVLQVSYDGLDDLEKEIFLDIAFFFKGEHKKDVVRILDACDFYPTRGLKVLEDKALITISHSGMIEMHDLIEEMGLNIVRGESKDPRNRSRLSDIKEVSDVLANKKGSDLIEGIKLDLSSIEDLHLNADTLNMMTNLRILRLYVPSGKISRNVHHSGVPSKLSGKLRYLEWNGFHLKSLPVTFCAKMLVEIRMPHSHVTELWQGVQDVANLVRIDLSECKHLKNLPDLSKASKLKWVNLSGCESLCDIHPSLFSFDTLETLMLDGCKKLKGLKSEKHLTSLRKISVDGCTSLKEFSLSSDSITSLDLSSTRIGMLDSTFERLTSLESLSVHGLRYGNIPDEIFSLKDLRELKICNSRVAIDKEKLHVLFDGSRYLRLLHLKDCCNLCELPDNIGGLSKLNELRLDGSCVKTLPASIEHLRKLKTLSLENCRELGSLPKLPPFITEFNAANCWSLTTVSSLNSSALGLKGKGKFISFKNCGWLDEPSLHCIMEGALELTELASCQNEIVKIVDEANTKNCNNKSVKVCFPGSKVPSQFKHRTTDSSITIGLPCYRNGRVGLTLCVVLSRSRVAAKIWCQCYLADGTKLEPATTWYHEAVTELNSDHVFIWCDSSLFNSIFESGTPLVFFEFFVTNDKGKRVTIDTPECGVCVMFDSKGYVASRQVLEHSASVLGLELNHYMVQQRRSAMAKQGMLSSLCPRKYQVFISFRGEDVRTSFISHLRSALSRDNIKAYMDDHNLQKGDELWPSLCQAIQDSELAIVVFSEHYAASKWCLNELVEILHCRKSQGLAVIPVFYEVDPSHIRKYDGTCGEAISKYETYFGDKDNESIQKWKAALAEAAHISGWDSHSREYKNDSQLIEKIVVDVSEKLSQGTPFKLKVEDFVQIEKHCGEVKLLLSKNQDQLQKNVHVIGIWGMGGIGKTTIAKALFSQLFPQYDAVCFLPNVREESRRIGLTSLRHKLLSDLLKEGHHERRLSNKKVLIVLDDVDSFDQLDELCEPCNYVGPDSKVIITTRNRHLLRGRVDDRHVYEVKTWSFAESLELFSLHAFNERRPKKGYEDLSNRAVNCARGVPLALKVLGSNLYSRSIKFWDGELSKLENYRNDSIQDVLQVSYDGLHDLEKKIFLDIAFFFKGEHKDDVIRILDACDFYATSGIEVLEDKALVTLSNSGMIQMHDLIQEMGLNIVRGGSEDPRNRSRLRDIEEVSDVLENKNGSDLIEGIKLDLSSIEDLHLNADTFDRMTNLRILRLYVPSGKRSGNVHHSGVLSKLSSKLRYLEWNGCRLKSLPKSFCGKMLVEICMPHSHVTELWQGVQDLANLVRIDLSECKHLKNVPDLSKASKLKWVNLSGCESLCDIHPSVFSLDTLETSTLDGCKNVKSLKSEKHLRSLKEISVIGCTSLKEFWVSSDSIKGLDLSSTGIEMLDSSIGRLTKLRSLNVEGLRHGNLPNELFSLKCLRELRICNCRLAIDKEKLHVLFDGSRSLRVLHLKDCCNLSELPENIWGLSKLHELRLDGSRVKTLPTTIKHLKRLNTLSLKNCRMLESLPKLPPNVLEFIATNCRSLRTVSISTLADFALRTGKGIIVSLQNCSNLLESPSLHCIMEDAHLATKSIVLKNMFLKELFRGTNTRIDNYDYVKRQFKYQTTPYSLVIVDLPSSKSDFVGFVRNDSNSDFVC* 2094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1671 2093 SUPERFAMILY L domain-like 1593 1989 - -
Gso10g1671 2093 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 442 IPR027417 -
Gso10g1671 2093 Pfam C-JID domain 949 1045 IPR045344 -
Gso10g1671 2093 Pfam BspA type Leucine rich repeat region (6 copies) 661 721 IPR026906 -
Gso10g1671 2093 Pfam BspA type Leucine rich repeat region (6 copies) 1746 1826 IPR026906 -
Gso10g1671 2093 Gene3D - 1289 1446 IPR027417 -
Gso10g1671 2093 Gene3D - 1456 1538 IPR042197 -
Gso10g1671 2093 Gene3D - 350 432 IPR042197 -
Gso10g1671 2093 ProSiteProfiles TIR domain profile. 1121 1291 IPR000157 GO:0007165
Gso10g1671 2093 SMART AAA_5 212 348 IPR003593 -
Gso10g1671 2093 SMART AAA_5 1328 1454 IPR003593 -
Gso10g1671 2093 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1299 1548 IPR027417 -
Gso10g1671 2093 SMART till_3 1122 1263 IPR000157 GO:0007165
Gso10g1671 2093 SMART till_3 13 148 IPR000157 GO:0007165
Gso10g1671 2093 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 151 IPR035897 -
Gso10g1671 2093 Gene3D - 1120 1288 IPR035897 -
Gso10g1671 2093 SUPERFAMILY L domain-like 488 912 - -
Gso10g1671 2093 SUPERFAMILY Toll/Interleukin receptor TIR domain 1118 1266 IPR035897 -
Gso10g1671 2093 Gene3D - 181 342 IPR027417 -
Gso10g1671 2093 ProSiteProfiles TIR domain profile. 12 176 IPR000157 GO:0007165
Gso10g1671 2093 Pfam Leucine Rich Repeat 609 627 IPR011713 -
Gso10g1671 2093 Gene3D Ribonuclease Inhibitor 503 719 IPR032675 -
Gso10g1671 2093 Gene3D Ribonuclease Inhibitor 1613 1827 IPR032675 -
Gso10g1671 2093 Gene3D Ribonuclease Inhibitor 1828 2031 IPR032675 -
Gso10g1671 2093 Gene3D Ribonuclease Inhibitor 720 905 IPR032675 -
Gso10g1671 2093 Pfam TIR domain 13 179 IPR000157 GO:0007165
Gso10g1671 2093 Pfam TIR domain 1122 1303 IPR000157 GO:0007165
Gso10g1671 2093 Pfam NB-ARC domain 1308 1534 IPR002182 GO:0043531
Gso10g1671 2093 Pfam NB-ARC domain 192 428 IPR002182 GO:0043531
Gso10g1671 2093 PANTHER NB-ARC DOMAIN PROTEIN 1121 2040 - -
Gso10g1671 2093 PANTHER NB-ARC DOMAIN PROTEIN 12 965 - -
Gso10g1671 2093 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1121 2040 IPR044974 GO:0006952
Gso10g1671 2093 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 965 IPR044974 GO:0006952
Gso10g1671 2093 Gene3D - 10 180 IPR035897 -
Gso10g1671 2093 PRINTS Disease resistance protein signature 1331 1346 - -
Gso10g1671 2093 PRINTS Disease resistance protein signature 1395 1409 - -
Gso10g1671 2093 PRINTS Disease resistance protein signature 1489 1503 - -
Gso10g1671 2093 PRINTS Disease resistance protein signature 1733 1749 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1671 Gso-Chr10 43315827 43330250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1671 9 880 WRKY Transcription Factor Family AT4G12020 30.709 4.83e-89 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1671 - - gsj:114371786 4174.39