Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1668 ATGGCCGTAGTAGGGAAGTATCGAGTGGGATGTTTCAGTATGAGAGCTAAGAGTTTGATAAGTAAGAAGCAGATTAGTACAAGATTAAGAAAAATGATAAAGTGTATATGTTCGAGGGAGCAGTTAAGAGTGGAGGAGTTGAGTTACTCATCAGAGTCACTGGCAACGAGGGACTATTCGGCAAGTGGTGGTTTATCATCTCGACCTGGTGAAATCGACCCAAAGGTTGATAATACCAACATTGAAGAAGCAGAGTCCTCTCTCCGTGAAAGTGGTTATTTGAACTATGAGGAAGCTAGAGCCTTGCTTGGAAGACTTGAGTATCAGAAAGGCAATATCGAAGCTGCACTTCATGTGTTTGAAGGAATAGATATTGCTGCTGTCATTCCCAAGTTGAAAGTTTCTATATCTAGAAGATGTGAACCCAATAAACGCCGTTCGCAAAGTGATGCAATGCCTCCTATGTCAATGCACGCTGTTAGTTTACTTCTTGAAGCTGTCTTTCTCAAGGCAAAATCGTTTCAGGCTCTTGGAAGGTTTCAAGATGCTGCTCAGTCATGCAAAACTATATTAGACACTGTTGAATCTGCTTTACCAGAAGGCTGGCCTGAAAACTTTGTTTCAGACTGTAAACTACAAGAGACAGTGGGAAATGCTGTTGAACTGCTTCCAGAGTTGTGGAAGCTTGCAGGCTCTCCTCAAGACATTATGTCATCCTATAGGAGGGCCTTGCTTTATCATTGGAATCTTGACATTGAAGCCACTGCAAGAATTCAAAAGGAATTTTCTTTTTTTCTTCTGTATAGTGGTTGTGAGGCAAGCCCTCCTGCTCTCCGCTCTCAGTTGGATGGTTCCTTTGTGCCAAGAAACAACATAGAAGAGGCTGTTCTTCTGCTTCTGATTCTGCTGAGAAAATCTATTCTTGGATACATTGCATGGGACCCTTCATTGCTTGATCACCTTTCTTTTGCTCTAAGTGTTTCTGGGGAATTCAAGACTCTAGCTCAACAGATTGAGGAATTGCTTCCTGAAAGCATGGAGAGAAAAGAAAGATACTATACTCTAGCTCTTTGTTACTGTGGGGAAGGTGAACATATCACTGCTTTGGACCTTCTGAGGAACTCTTTGAATCATAGAGAGAACTCAAACTGCATAAAGGAATTGCTTCTAGCTTCAAAAATTTGTGCTGACAACAAGGTTTGCGTCGAAGAAGGAATCAAATATTCTTGCAAAGCCATTTCTCAGTTTAATGGAAAGTGCATGCAGATGGTAGCTATTGCAAATTGCTTACTAGGTGTTCTGCTGTCATCAAAATCCAGGTCAGCTGCTTCTGAATCAGAGAAGGTTTTTATGCAGTCAGAAGCACTCAGTGCTCTAAAAGCTGCTGAGGGAATGATGAGAGAAAGTGATCCTTACATCGTCCTTCATCTTTGTCTAGAATATGCTGACCAGAGGAAGTTAAGCATTGCTCTTGATCATGCAAAGAAACTGATTAAGCTTGAGGATGGATCTAGTGTTAGTGGATATATTCTATTAGCACGGATTTTATCAGCTCAACAAAAGTTTGTAGATGCAGAACTTGTTATAGATGCTGCTCTAGATCAAAGTGGCAAATGGGATCAAGGAGAATTGTTGAGAACTAAAGCTAAACTACGGATTGCACAAGGAAAATTAAAGAATGCAGTGGAGACATATACTTTTCTTCTTGCTGTTCTTCAGGTTCAAAATAAAAGTTTAGGCACAGCAAGTAAGGTTGTGAAGAATAAGGGAAACCGTGACAGAAGACTGGAAATGGAAATATGGCTTGATTTAGCCAATGTGTACACGGCCTTATCACAGTGGCAGGATGCTGAAGTTTGTCTCGCAAAATCTGAGGCTATTAATCCCTATTCTGCTTCTAGATGGCACACAAAAGGTTTGCTTTCTGAGGCCAGAGGTTTTCATCAAGAAGCTTTGAAATCATTTAGGAAAGCATTAGATATTGAGCCAAACCATGTACCAAGTTTGATATCCACAGCCTGTGTACTCAGACAACTTGGTGGTCAATCATCTTCAATTGTTAGAAGCCTTCTCACTGACGCACTACGCCTTGACAGAACAAACCCTTCTGCTTGGTACAATCTTGGACTGCTCTACAAAGCTGATTTGGGGACATCAGCAATGGAAGCTGTTGAATGCTTTGAAGCAGCAGCTCTTCTTGAAGAATCTTCTCCCATTGAACCCTTTAGATAA 2232 0.4113 MAVVGKYRVGCFSMRAKSLISKKQISTRLRKMIKCICSREQLRVEELSYSSESLATRDYSASGGLSSRPGEIDPKVDNTNIEEAESSLRESGYLNYEEARALLGRLEYQKGNIEAALHVFEGIDIAAVIPKLKVSISRRCEPNKRRSQSDAMPPMSMHAVSLLLEAVFLKAKSFQALGRFQDAAQSCKTILDTVESALPEGWPENFVSDCKLQETVGNAVELLPELWKLAGSPQDIMSSYRRALLYHWNLDIEATARIQKEFSFFLLYSGCEASPPALRSQLDGSFVPRNNIEEAVLLLLILLRKSILGYIAWDPSLLDHLSFALSVSGEFKTLAQQIEELLPESMERKERYYTLALCYCGEGEHITALDLLRNSLNHRENSNCIKELLLASKICADNKVCVEEGIKYSCKAISQFNGKCMQMVAIANCLLGVLLSSKSRSAASESEKVFMQSEALSALKAAEGMMRESDPYIVLHLCLEYADQRKLSIALDHAKKLIKLEDGSSVSGYILLARILSAQQKFVDAELVIDAALDQSGKWDQGELLRTKAKLRIAQGKLKNAVETYTFLLAVLQVQNKSLGTASKVVKNKGNRDRRLEMEIWLDLANVYTALSQWQDAEVCLAKSEAINPYSASRWHTKGLLSEARGFHQEALKSFRKALDIEPNHVPSLISTACVLRQLGGQSSSIVRSLLTDALRLDRTNPSAWYNLGLLYKADLGTSAMEAVECFEAAALLEESSPIEPFR* 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1668 743 Pfam Tetratricopeptide repeat 633 665 IPR019734 GO:0005515
Gso10g1668 743 Gene3D Tetratricopeptide repeat domain 71 443 IPR011990 GO:0005515
Gso10g1668 743 MobiDBLite consensus disorder prediction 59 78 - -
Gso10g1668 743 PANTHER OS10G0471400 PROTEIN 24 743 - -
Gso10g1668 743 PANTHER PROTEIN NPG1 24 743 IPR043376 -
Gso10g1668 743 Gene3D Tetratricopeptide repeat domain 466 577 IPR011990 GO:0005515
Gso10g1668 743 SUPERFAMILY TPR-like 165 562 IPR011990 GO:0005515
Gso10g1668 743 SUPERFAMILY TPR-like 543 713 IPR011990 GO:0005515
Gso10g1668 743 Gene3D Tetratricopeptide repeat domain 578 740 IPR011990 GO:0005515
Gso10g1668 743 SMART tpr_5 598 631 IPR019734 GO:0005515
Gso10g1668 743 SMART tpr_5 506 539 IPR019734 GO:0005515
Gso10g1668 743 SMART tpr_5 702 737 IPR019734 GO:0005515
Gso10g1668 743 SMART tpr_5 349 382 IPR019734 GO:0005515
Gso10g1668 743 SMART tpr_5 632 665 IPR019734 GO:0005515
Gso10g1668 743 SMART tpr_5 164 197 IPR019734 GO:0005515
Gso10g1668 743 ProSiteProfiles TPR repeat profile. 632 665 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1668 Gso-Chr10 43262974 43267787 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1668 23 743 Calmodulin-binding Proteins AT4G28600 53.469 0.0 722
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1668 K21843 - gmx:100789469 1435.24