Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1648 ATGGATAGGTGCTGGTTTAATAAGTTCAAGCCAAAGGATAAAACACAGTCTTCAAAAAACAAGGAAACTAAAGGCATTGCAAAAGAAGGGTCAAAGCCCCTAACAAATGAAGAAGCACCTTCCAATGTGACCAAACAGAAGGTTGCAGCTGCAAAGCAGTACATAGAAAACCACTATAAGAAACAGATGAAGGACTTGGAGGAGAGACAGGAACGACGTAATATGCTAGAAAAAAAGTTGGCTGATGCTGAAGTCTCTGAGGAAGAGCAGAACAATTTGCTAAAATATTTTGAGAAAAAGGAGAGGGAATACATGCGCCTTAAGAGGCATAAAATGGGGGCTGATGATTTTGAGCCCCTAACTATGATAGGGAAGGGTGCATTTGGGGAGGTCAGAGTCTGCCGAGAGAAAACAACTGGTCATGTATATGCTATGAAGAAACTTAAGAAATCAGAGATGCTTCGCAGAGGCCAGGTTGAACATGTAAAAGCTGAGAGGAATCTACTTGCAGAAGTTGACAGCAACTGCATTGTAAAGCTTTATTGTTCCTTTCAAGATGAAGAGTATTTATATCTCATAATGGAGTATCTACCTGGTGGTGATATGATGACGTTGCTCATGCGAAAGGATATACTGACAGAAGATGAGGCCAGGTTCTATGTTGGGGAGACTGTCCTAGCTATAGAGTCGATTCATAAACATAATTATATTCATAGAGATATCAAGCCTGACAATTTGCTGCTAGATAGAAATGGTCACATGAAATTATCAGACTTTGGATTATGTAAACCACTGGACTGCAGTAATCTTCAGGAAAAGGACTTCTCTATTGGTAGCAACAGAAGTGGAGCCCTTCAGAGCGATGGGCGTCCGGTGGCTCCTAAAAGAAGCCAACAGGAGCAACTGCAGCATTGGCAGAAAAATAGGCGAATGCTTGCCTATTCTACAGTCGGAACACCTGACTATATTGCCCCCGAAGTTCTTCTGAAGAAAGGATATGGCATGGAATGTGATTGGTGGTCCTTGGGAGCGATAATGTATGAAATGTTAGTGGGGTATCCGCCCTTTTATTCAGATGAACCAATGTTGACTTGTAGAAAGATAGTAAATTGGAGAAGTTATTTAAAATTTCCAGAAGAAGTTAAACTTTCGGCAGAAGCAAAGGATCTTATTAGTAGACTCCTATGTAATGTGGACCAGAGGCTTGGAACCAAAGGGGCTGATGAAATAAAGGCTCACCCATGGTTTAAAGGTATTGAATGGGACAAATTGTACCAAATGAAAGCTGCTTTTATTCCTGAGGTTAATGATGAATTAGATACTCAAAATTTTGAGAAGTTTGAAGAGGTTGACAACCAAACTCAACCTTCCTCAAAATCAGGCCCATGGAGAAAGATGCTGTCATCTAAAGATGTCAACTTTGTCGGGTACACATATAAGAACTATGAAATCGTGAATGATGATCAACTACCTGAAATTGCCGAATTGAAGAAGAGCACAAAACCTAAGCGGCCATCTATCAAGACCCTATTTTATGATGAATCGGCTACAACTGCTAATCAACCTGCCCAAGGGAGCTTCTTAAAACTCTTACCTACTCAACCGGAAGTTCCTGAGAAGAGTGAATCTCAATGA 1635 0.4073 MDRCWFNKFKPKDKTQSSKNKETKGIAKEGSKPLTNEEAPSNVTKQKVAAAKQYIENHYKKQMKDLEERQERRNMLEKKLADAEVSEEEQNNLLKYFEKKEREYMRLKRHKMGADDFEPLTMIGKGAFGEVRVCREKTTGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDEEYLYLIMEYLPGGDMMTLLMRKDILTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRNGHMKLSDFGLCKPLDCSNLQEKDFSIGSNRSGALQSDGRPVAPKRSQQEQLQHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDEPMLTCRKIVNWRSYLKFPEEVKLSAEAKDLISRLLCNVDQRLGTKGADEIKAHPWFKGIEWDKLYQMKAAFIPEVNDELDTQNFEKFEEVDNQTQPSSKSGPWRKMLSSKDVNFVGYTYKNYEIVNDDQLPEIAELKKSTKPKRPSIKTLFYDESATTANQPAQGSFLKLLPTQPEVPEKSESQ* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1648 544 SMART pkinase_C_6 417 481 IPR000961 GO:0004674|GO:0005524|GO:0006468
Gso10g1648 544 Gene3D Transferase(Phosphotransferase) domain 1 315 434 - -
Gso10g1648 544 MobiDBLite consensus disorder prediction 279 300 - -
Gso10g1648 544 SMART serkin_6 117 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g1648 544 ProSitePatterns Protein kinases ATP-binding region signature. 123 146 IPR017441 GO:0005524
Gso10g1648 544 MobiDBLite consensus disorder prediction 1 45 - -
Gso10g1648 544 CDD STKc_NDR_like 115 480 - -
Gso10g1648 544 MobiDBLite consensus disorder prediction 522 544 - -
Gso10g1648 544 Gene3D Phosphorylase Kinase; domain 1 115 200 - -
Gso10g1648 544 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 40 518 - -
Gso10g1648 544 ProSiteProfiles AGC-kinase C-terminal domain profile. 417 489 IPR000961 GO:0004674|GO:0005524|GO:0006468
Gso10g1648 544 Gene3D Transferase(Phosphotransferase) domain 1 201 267 - -
Gso10g1648 544 Coils Coil 59 93 - -
Gso10g1648 544 Pfam Protein kinase C terminal domain 435 479 IPR017892 GO:0004674|GO:0005524|GO:0006468
Gso10g1648 544 MobiDBLite consensus disorder prediction 1 28 - -
Gso10g1648 544 SUPERFAMILY Protein kinase-like (PK-like) 91 469 IPR011009 -
Gso10g1648 544 Gene3D Phosphorylase Kinase; domain 1 435 445 - -
Gso10g1648 544 Pfam Protein kinase domain 119 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g1648 544 ProSitePatterns Serine/Threonine protein kinases active-site signature. 236 248 IPR008271 GO:0004672|GO:0006468
Gso10g1648 544 PANTHER SERINE/THREONINE-PROTEIN KINASE 40 518 - -
Gso10g1648 544 ProSiteProfiles Protein kinase domain profile. 117 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1648 Gso-Chr10 43073747 43082856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1648 3 542 AGC Kinase Gene Family AT3G23310 82.721 0.0 912
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Gso10g1648 Pkinase 4.1e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1648 K08790 - gmx:100783095 1112.44