Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1642 ATGGTGAGAGCTCCTTGTTGTGAAAAGATGGGTTTGAAGAAGGGTCCTTGGGCTCCCGAGGAAGATCAAATCCTCACATCTTACATTGACAAACATGGTCATGGCAATTGGCGTGCCCTCCCAAAGCAAGCAGGCTTGTTAAGGTGTGGGAAAAGCTGTAGACTCCGCTGGATTAACTATTTGAGGCCTGATATTAAAAGAGGGAATTTCACAATTGAAGAAGAAGAAACTATCATTAAGCTGCATGACATGCTGGGGAACAGGTGGTCAGCAATTGCAGCCAAATTGCCAGGAAGAACTGACAATGAGATTAAAAATGTTTGGCACACCAATTTGAAGAAGAGGCTGCTGAAATCAGACCAGTCCAAGTCCAAACCAAGTTCCAAAAGAGCCATTAAGCCAAAAATCGAACGTTCTGATTCAAATTCCAGCATCATAACTCAATCAGAACCTGACAAATTTAATTTCAGAGAAATGGACACAATAACATCATCAGCATGCACTACTTCTAGTAGTGATTTTTCATCGGTCACGGTTGGCGACAGCAAAAATATCAAGAGTGAAGACACAGAGTCTACGGAAACAATGCCTGTGATTGATGAGAGCTTTTGGTCAGAAGCTGCAATTGATGATGAAACCCCCACCATGTCATCATCACAGTCTTTGACAATCTCAAATGAGATGCGACTTCAATACCCTTTTGCTAACTATGAGGAAACTTTCCAGCAGGGTCATCATGCTTATGATTCAAACTTTGATGATGGCATGGATTTCTGGTATGACATATTTACCAGGACCAATGATTCAATAGAATTGCTAGAGTTCTGA 828 0.4155 MVRAPCCEKMGLKKGPWAPEEDQILTSYIDKHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTIEEEETIIKLHDMLGNRWSAIAAKLPGRTDNEIKNVWHTNLKKRLLKSDQSKSKPSSKRAIKPKIERSDSNSSIITQSEPDKFNFREMDTITSSACTTSSSDFSSVTVGDSKNIKSEDTESTETMPVIDESFWSEAAIDDETPTMSSSQSLTISNEMRLQYPFANYEETFQQGHHAYDSNFDDGMDFWYDIFTRTNDSIELLEF* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1642 275 MobiDBLite consensus disorder prediction 166 183 - -
Gso10g1642 275 CDD SANT 69 112 IPR001005 -
Gso10g1642 275 Gene3D - 11 67 - -
Gso10g1642 275 CDD SANT 16 61 IPR001005 -
Gso10g1642 275 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso10g1642 275 PANTHER MYB15 1 269 - -
Gso10g1642 275 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso10g1642 275 Gene3D - 68 142 - -
Gso10g1642 275 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 269 - -
Gso10g1642 275 MobiDBLite consensus disorder prediction 166 194 - -
Gso10g1642 275 SMART sant 66 114 IPR001005 -
Gso10g1642 275 SMART sant 13 63 IPR001005 -
Gso10g1642 275 MobiDBLite consensus disorder prediction 118 137 - -
Gso10g1642 275 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Gso10g1642 275 MobiDBLite consensus disorder prediction 118 152 - -
Gso10g1642 275 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso10g1642 275 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Gso10g1642 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gso10g1642 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1642 Gso-Chr10 43020012 43022369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1642 1 271 MYB Transcription Factor Family AT2G31180 47.794 3.29e-79 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso10g1642 Myb_DNA-binding 4.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1642 K09422 - gmx:100101837 536.569