Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1637 ATGAGTGTGTCGTTGTCAGAGACAGAGACAGATATAAAGACAATAACAATGGGAGCGGCGAAGCTCAACTATGAGAAGGTTTCAGCATGCGTGACATGTCCTTTGTGCAATAAGTTTTTCAGAAACGCCACCACAATATCAGAATGCTGTCATAGTTTTTGCAGGGAATGTGTAGACAAGAAGTTAATAGATGAGAAATTAAAGCACTGTCCAATATGCAATAGAGACTTGGGTTGTTCTCCACATGATAAATTAAGGCCAGATCCTTGTCTGCAAGATTTGAGGGATAAAATTTTCCCATTAGAAGAACAAAATGCTTCAGTCAAGTTGAACATCAACAGAAAGAAGAATTCTCCATCTTTGTTAAAAAACAATACAAAAATAGACAAAGCTGCTTCAAAACCTGATAAAGCAGAAGATGAAAAGCGTGGTGAAGTAGAAGCTCTGGAAGAAGTTTCTAGTTATACAATAGGATCCGCAAGAAGAGCCAAAGCTGCAGCTAGATTAAAATTTACTCGCTCTGCACCACCTCCTTCTTGTCAACTTGACAAAGTAGGGGGAGAAGAAAAGAAAGATGGTGGTCTTCCCCCAGGTGAAACTTCCAACGGAAGTCTCAAAATCAAAATTCCGAATTCTTCGAAAGCAAATTCAAGTCAACAACCAGAGACCAACAAGAGGGACAATTCTGAGCTTAGGAATGAAATGGCTGATATGTTTGAGCCATTAAATTCCCTGGTGGAACCTGGAAGCAAAAAGCCTCGTAAAAAGTCCACCATGCAAGAAAATACTGTCACTCCAATAGTGCGCTCCCATGACAATGCTGCTGATCAAAATGAATCAACTCCTTCAAACTCAGATTCAGTCCAACACCAAAGGCCTCTGAGAACTCAAGAGAAAACATTCAGAATCTCTGAGGACTTGAATTTTCCTGCACAACCTGAGATTGGTTCCAACATCAAAAGCAACAAAGAATTTGGTCCAATATGGTTCTGCTTGGTTGCTGCAGAAGAGAAGAAAGCAAGTGCACGATTGCCACAGTTATCCTCCAGCTACCTAAGGGTCAAGGATGGTAGTGTAACTGTTTCCTATATTAAAAAGTATCTCGTGAAGAAGCTTGGTCTTGGTAGCGAAGCAGAGGTGGAGATCACATTACAAGGTCGGGCACTTTTATCTTCATTGCAACTACGAAATTTAGTAGATATGTGGTTGCAAACAGTGCCAAAGAATGGGATTCAGGCATCTGTTGGAAGCTCAGCCAAGGATTTTATTATGGTCCTTTCATATGGTCGAAAGGCTTGTGACACCTCATAA 1311 0.4073 MSVSLSETETDIKTITMGAAKLNYEKVSACVTCPLCNKFFRNATTISECCHSFCRECVDKKLIDEKLKHCPICNRDLGCSPHDKLRPDPCLQDLRDKIFPLEEQNASVKLNINRKKNSPSLLKNNTKIDKAASKPDKAEDEKRGEVEALEEVSSYTIGSARRAKAAARLKFTRSAPPPSCQLDKVGGEEKKDGGLPPGETSNGSLKIKIPNSSKANSSQQPETNKRDNSELRNEMADMFEPLNSLVEPGSKKPRKKSTMQENTVTPIVRSHDNAADQNESTPSNSDSVQHQRPLRTQEKTFRISEDLNFPAQPEIGSNIKSNKEFGPIWFCLVAAEEKKASARLPQLSSSYLRVKDGSVTVSYIKKYLVKKLGLGSEAEVEITLQGRALLSSLQLRNLVDMWLQTVPKNGIQASVGSSAKDFIMVLSYGRKACDTS* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1637 436 MobiDBLite consensus disorder prediction 259 291 - -
Gso10g1637 436 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIPH-RELATED 19 432 - -
Gso10g1637 436 MobiDBLite consensus disorder prediction 204 224 - -
Gso10g1637 436 Pfam Zinc finger, C3HC4 type (RING finger) 33 73 - -
Gso10g1637 436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 143 IPR013083 -
Gso10g1637 436 Gene3D - 314 407 - -
Gso10g1637 436 SUPERFAMILY RING/U-box 27 99 - -
Gso10g1637 436 MobiDBLite consensus disorder prediction 168 293 - -
Gso10g1637 436 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Gso10g1637 436 MobiDBLite consensus disorder prediction 116 145 - -
Gso10g1637 436 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 19 432 IPR044807 GO:0004842
Gso10g1637 436 ProSiteProfiles Zinc finger RING-type profile. 33 74 IPR001841 -
Gso10g1637 436 SMART ring_2 33 73 IPR001841 -
Gso10g1637 436 MobiDBLite consensus disorder prediction 129 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1637 Gso-Chr10 42978150 42982263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1637 19 355 C3H Transcription Factor Family AT2G30580 31.856 1.12e-37 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1637 K16277 - gmx:102669950 540.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1838 20 49039212 49044587 Gso10g1637 10 42978150 42982263 GST