Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1634 ATGACAACTATGCTGACAAATGAGCATGGTCTGAGTTTGAACCTCAAGGAGACTGAGCTTTGCCTCGGTTTGCCTGGCGGGGGCTCTGAAGTGGAAACTCCAAGGGCCACTGGGAAGAGAGGGTTCTCTGAGACCGTTGATCTGAAGCTTAATCTTCAGACCAAGGAAGATCTGAATGAGAATCTGAAGAATGTCTCAAAGGAGAAGACTCTCCTTAAGGATCCTGCTAAGCCGCCGGCTAAGGCTCAAGTGGTTGGTTGGCCACCAGTGAGATCATACAGGAAGAACATGATGGCAGTACAGAAGGTTAGCACTGAGGAAGTAGCTGAGAAGACAACAAGCAGCACTACTGCTAATTCTGGGGCGTTTGTCAAGGTTTCCATGGATGGAGCACCTTACCTTCGCAAGGTGGACCTCACAATGTACAAAAGCTACAAAGACTTATCTGATGCCTTGGCCAAAATGTTCAGCTCCTTCACCATGGGTAACTATGGGGCCCAAGGAATGATAGACTTCATGAATGAGAGCAAGTTGATGGATCTTCTTAACAGCTCTGAGTATGTGCCAACCTATGAAGATAAGGATGGTGACTGGATGCTCGTGGGTGATGTCCCATGGGAGATGTTTGTTGGGTCATGCAAGCGCCTGCGAATAATGAAGGGATCAGAAGCGATTGGCCTTGCGCCAAGAGCAATGGAAAAATGCAAAAGCAGAAGCTGA 720 0.4806 MTTMLTNEHGLSLNLKETELCLGLPGGGSEVETPRATGKRGFSETVDLKLNLQTKEDLNENLKNVSKEKTLLKDPAKPPAKAQVVGWPPVRSYRKNMMAVQKVSTEEVAEKTTSSTTANSGAFVKVSMDGAPYLRKVDLTMYKSYKDLSDALAKMFSSFTMGNYGAQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVGSCKRLRIMKGSEAIGLAPRAMEKCKSRS* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1634 239 ProSiteProfiles PB1 domain profile. 121 221 IPR000270 GO:0005515
Gso10g1634 239 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 9 232 IPR003311 GO:0005634|GO:0006355
Gso10g1634 239 SUPERFAMILY CAD & PB1 domains 114 220 - -
Gso10g1634 239 Coils Coil 48 68 - -
Gso10g1634 239 PANTHER AUXIN-RESPONSIVE PROTEIN IAA7 9 232 - -
Gso10g1634 239 Gene3D - 115 233 - -
Gso10g1634 239 Pfam AUX/IAA family 36 230 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1634 Gso-Chr10 42946321 42948979 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1634 104 229 B3 DNA Binding Superfamily AT4G23980 32.540 3.73e-10 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gso10g1634 AUX_IAA 9.6e-84 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1634 K14484 - gmx:547949 475.322