Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1628 ATGGGAAAAAGAGATGCAGTTTGCAGGTTCAATAGTTTCAACTTTCAGGCAATAGAAAGAGTTCTTTTTACACGGTTTGAGTTGAGAATCCAGTATAGACTTTCCGCTATGGCAGCAGGATTGGAACTCATACCCATAGGTACAATTTTGACAGTGGTAACTAACCAAGTCTTGAAGACGGCTCATGCAGCATCTGATGTTCTTATTGGTAAAGAAAGCTTCAAGGCCCTTTCGACACATCTATTTGATATTGAGCCAGTGCTAAAGGAATTACAGCTTCAAGAATTGAATGACTCTCAAGCCGCAAGGGTTGCTCTGGAGTCTCTTGAAGCAGATGTTAAGAAGGCAAACAATTTGGTTGACAAGTATAGGAACCGTGGCCGTTTTTACTTACTGATTAAGTGTCGATCCATAGTTGAGGAGGTTGAACAAGTCACAAGGGATATTGGAAAGTCTCTGGCTGCATTGTCTATTGCAAATACTGAAGTCCTATCAAGAATTTCTGATCAGGTCAATAGACTACAAAATGAGATGCAAAGGGAGAAGTTTGAGGCTTCACAATCTCAGATTCAAATTGTTGACAAGTTGAACCAGGCACTTAAAGAACAGAAACATGATCAGGCTTTTGCGAACGACATGCTAAAGGAGATAGCAAGGGCAGTTGGGGTGCCAGTGGAACCCTCAGAGATAAGCAAAGAGTTGGCCAGCATTAGGAAGGAAAAAGAAGAAGCTTCCATCCGGAAAGAAAGAGCTGAATGTGTTCTTTTGGACCAGATCATTCAGTTACTCTCTCGGGCTGATGCAGCAAGGGATTATGAAGAAGTGGAGAGGCGGTACTTTGAAAGGGTTAAGGTGATAGAGAGATATGATTCAAGGGAAAAACATATCCCTCCACTCAATCCTTTCCATTGTTCTATAACCAGGAATGTTATGGTAGATCCTGTTAGCCTTTGTACCGGTACTACATGTGAACGATCTGCTATTGAAGCTTGGTTTTGTGATGGCAACAGGACAGACCCAGAAACTAAAGAGGTTCTTGAAGATACTACCTTGAGGTCTAACATTCCACTAAGACAATCCATTGAAGAGTGGAGAGAACTTAATTACTGTCTGGTCATAAGGTCTATTAGGGAAAACTTGTTATCATATTCTGACCTGCAAGAATCCCTGAGCCAAATGCAGACTCTAGTAAGAGAGAATTCGATTAACAAGGATTGGATTTCTATAGCAGAGCTTACTGACATTGTGATCTCTATCCTTGGGAGCTCTGATGACAGAGAAGTGAAGATGAAGATTTTGATAACTTTGAAGGATGCTGTAGAGGGGAATACAAGAAACAAGGAGAAAGTGGCTGAATCTCAAGGATGGGATAACATTATTTCCTGCTTAGGGAGTGACTCTAGCACTTCAAAGGCAGCTATTGATTTGCTACATGAGTTGCTTCAAGAACAATCCGGGTGGAATGAATGTCTCTGCAGAAAGCTTTCTGAAAATCGCACTGCAGTTCAGTTCCTTGTTGCCCTTCTGAAGAATCATGTCAATCATTCTGCTGAGGTTGCAGAAAACATTTTGATGAATCTTTTTGAACTAAATGATGAAACCATTACTATTGCTGCTAATTTTGGCTGGTATAAACCACTTGTTGATCGCATGATTCAAGGACCAGATTCAAGAATATCAATGACAAAAGCCATAGTTAATTTGGAGTTGAAGGATCCAAACTTAAAACTCCTTGGCAAGGAAGGAGCTATACCTCCTTTGCTAGAAATGCTGTCAGGCAATATTGAATCAAAAGACTTGTCGTTATCAGCCCTGGTTAAATTAGCAGGATCTCATGCCAATAAGGGAATTATTGCTGCATCTGGAGGAGTCCCTCTTATTATAGATTTAATGTTCTCTCCTCAGTCACGGACACTAATTATCATTAAATGTTCTGAAATCATTGAGAAGCTTTCTTCTGATGGTGATGGAATTGATTTCTTTGTTGATGGAGAAGGGAAACAACTTGAGTTGGATTCCATCATCGCCAATTTGCTAGCTTTGCAGCAGACTTCCAACTCAGGTCACAACATCCGTAAGCCTGCACTGAGTGCACTTCTTGGAATTTGCAAGTTTGAGACTGGTTTGGTTAAGAAAGCAATTCTTGCAGCCAATGGTGTATCTCTAATTCTCCCACTCCTTGATGATTCTGACTCAGAAATCAGGGAGACTTCCATAATTCTGCTCTTTCTTTTCTCTCAACATGAGCCGGAAGGAGTAGTTGAATACCTCTTCAGGCCTAGAAGGCTTGAAGCCTTGATTGGATTTCTTGAGAATGAAGAAAATGCCAATGTGCAGATAGCTGCTGCTGGTTTACTGGCTAACCTGCCAAAATCCGAAAGAGAACTCACTATGAAGTTGATTGAGTTGGGTGGACTCGATGCAATCATAAGCATTTTGAAAACTGGGAAAATGGAAGCAAAAGAAAATGCTCTCACTGCACTCTTCAGGTTCACAGACCCTACAAATATCGAGTCACAACGAGATCTGGTTAAGCGCGGAATATACCCTTTGCTTGTAGATTTTCTCAACACTGGTTCAGTCACAGCAAAAGCAAGAGCAGCAGCATTCATTGGTGATCTTTCTATGAGCACTCCAAAACTCACAGTTGTTCCCAAACCAACTGGTTGCTGGCTTTTCAGATCATCGCGTGTTCCGTTATGTTCAGCACATGGGAGTGTATGCAGTGTGAACACCACATTTTGTCTTTTAGAAGCAAAGGCTTTACCTGGCTTGATAAAGCTGTTACATGGGGAGGTTCATGCAACTGCTTGTGAAGCAATACAAACACTCTCCACATTGGTTTTGGAAGATTTTCCTCAAAGGGGAGCTCGTGTCTTGCATGAATATAATGCAATAAGGTCCATAATGGACATTTTGAACTGGGGAACTGATTCTCTAAAGGCAGAAGCTCTAGGACTGTTGGAGAAGGTGTTTGTGTCAAAGGAAATGGTAGAATACTATGGAACAACAGCTAGATCACGTTTAATTGGTCTCACTGGCATGAATATATATGGGGATGGACACCTTAGGAGAAAAGCTGCCAAGGTACTATCATTGCTTGAACGCTACTCAAAGTCATCATCATCTGCAATCTCAGGAGTTCCGGAGTGA 3153 0.4139 MGKRDAVCRFNSFNFQAIERVLFTRFELRIQYRLSAMAAGLELIPIGTILTVVTNQVLKTAHAASDVLIGKESFKALSTHLFDIEPVLKELQLQELNDSQAARVALESLEADVKKANNLVDKYRNRGRFYLLIKCRSIVEEVEQVTRDIGKSLAALSIANTEVLSRISDQVNRLQNEMQREKFEASQSQIQIVDKLNQALKEQKHDQAFANDMLKEIARAVGVPVEPSEISKELASIRKEKEEASIRKERAECVLLDQIIQLLSRADAARDYEEVERRYFERVKVIERYDSREKHIPPLNPFHCSITRNVMVDPVSLCTGTTCERSAIEAWFCDGNRTDPETKEVLEDTTLRSNIPLRQSIEEWRELNYCLVIRSIRENLLSYSDLQESLSQMQTLVRENSINKDWISIAELTDIVISILGSSDDREVKMKILITLKDAVEGNTRNKEKVAESQGWDNIISCLGSDSSTSKAAIDLLHELLQEQSGWNECLCRKLSENRTAVQFLVALLKNHVNHSAEVAENILMNLFELNDETITIAANFGWYKPLVDRMIQGPDSRISMTKAIVNLELKDPNLKLLGKEGAIPPLLEMLSGNIESKDLSLSALVKLAGSHANKGIIAASGGVPLIIDLMFSPQSRTLIIIKCSEIIEKLSSDGDGIDFFVDGEGKQLELDSIIANLLALQQTSNSGHNIRKPALSALLGICKFETGLVKKAILAANGVSLILPLLDDSDSEIRETSIILLFLFSQHEPEGVVEYLFRPRRLEALIGFLENEENANVQIAAAGLLANLPKSERELTMKLIELGGLDAIISILKTGKMEAKENALTALFRFTDPTNIESQRDLVKRGIYPLLVDFLNTGSVTAKARAAAFIGDLSMSTPKLTVVPKPTGCWLFRSSRVPLCSAHGSVCSVNTTFCLLEAKALPGLIKLLHGEVHATACEAIQTLSTLVLEDFPQRGARVLHEYNAIRSIMDILNWGTDSLKAEALGLLEKVFVSKEMVEYYGTTARSRLIGLTGMNIYGDGHLRRKAAKVLSLLERYSKSSSSAISGVPE* 1051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1628 1050 Coils Coil 234 254 - -
Gso10g1628 1050 SUPERFAMILY ARM repeat 670 1038 IPR016024 -
Gso10g1628 1050 ProSiteProfiles U-box domain profile. 297 371 IPR003613 GO:0004842|GO:0016567
Gso10g1628 1050 Gene3D - 384 541 IPR011989 -
Gso10g1628 1050 Gene3D - 45 161 IPR036537 GO:0007166
Gso10g1628 1050 Coils Coil 99 126 - -
Gso10g1628 1050 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 371 IPR013083 -
Gso10g1628 1050 Pfam U-box domain 302 366 IPR003613 GO:0004842|GO:0016567
Gso10g1628 1050 SUPERFAMILY ARM repeat 415 751 IPR016024 -
Gso10g1628 1050 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 43 1047 - -
Gso10g1628 1050 SMART arm_5 909 949 IPR000225 GO:0005515
Gso10g1628 1050 SMART arm_5 707 747 IPR000225 GO:0005515
Gso10g1628 1050 SMART arm_5 836 876 IPR000225 GO:0005515
Gso10g1628 1050 SMART arm_5 571 610 IPR000225 GO:0005515
Gso10g1628 1050 SMART arm_5 611 653 IPR000225 GO:0005515
Gso10g1628 1050 SMART arm_5 749 791 IPR000225 GO:0005515
Gso10g1628 1050 SMART arm_5 443 482 IPR000225 GO:0005515
Gso10g1628 1050 SMART arm_5 793 833 IPR000225 GO:0005515
Gso10g1628 1050 Coils Coil 164 191 - -
Gso10g1628 1050 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 43 1047 - -
Gso10g1628 1050 Gene3D - 892 1045 IPR011989 -
Gso10g1628 1050 SUPERFAMILY RING/U-box 286 367 - -
Gso10g1628 1050 Gene3D - 553 882 IPR011989 -
Gso10g1628 1050 SMART Ubox_2 301 364 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1628 Gso-Chr10 42844187 42849969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1628 302 1005 U-box Gene Family AT1G20780 27.963 9.65e-45 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1628 - - gmx:100783638 1935.61