Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1616 ATGGAGGGAAGAGAGAATTTTGGTGTTGTGGTGGGTGATGAGGCTCCAGAGAGCTTCCATGTGGCTCCTAGAATTGAGAACAACTTGGACTTTTCAAGGGCGACCGTGCCGGCGCCGGCGCCACCGACGGAGGGAAAAAAGAAGAGAGGGAGGCCGAGGAAGTATGGGCCGGATGGGAAGCCGGCGTTGGGAGCGGTGACGGCGCTTTCGCCGATGCCGATTTCGTCGTCGATTCCGTTGACGGGCGAGTTTTCTGCTTGGAAGAGGGGTAGAGGGAGGCCTGTTGAATCTATCAAGAAGTCATCGTTTAAGTTTGAGGTTGAAAGCCCAGGACCAGGCGAGGGAATAGCATACTCAGTTGGTGCCAATTTCACACCACATGTGCTCACAGTAAATGCGGGCGAGGATGTCACTATGAAGATTATGTCCTTCTCTCAACAAGGATCACGTGCTATATGCATTCTATCAGCAACGGGGACAATTTCAAATGTTACACTTCGTCAACCGTCTTCTTGTGGTGGTACTTTAACATATGAGGGACGGTTTGAGATTCTTTCCTTGTCTGGTTCCTTTATGCCAACTGAGAATGGAGTTACCAGAAGCAGATCTGGAGGGATGAGTGTCTCTTTGGCTGGTCCAGATGGTCGAGTAATGGGGGGCGGACTTGCTGGTTTGTTGGTAGCTGCTGGTCCAGTGCAGGTTGTGGTGGCCAGTTTTCTTCCTGGTCACCAGTTGGAGCATAAAACCAAGAAGCAAAGGGTGGGGCATGTATCAACTATTAGCCCTTCACCTGTTAATCTTATCACTAGTGAGGAAATAATAGTCAGTTTCGGTGGAGTAAAGCCTATTATGACACCTGCTGCTTTTCAAGAAGAGAATATTGCTTCTTTTAACAATGGTCAAGACTATAGAAACTCATCAGTTGATGACAAAGATCCTTTGCCTGAAAAGGAGTCTAACCTAAGCCAATCAAATGCTGAGGCTGTATGCTAA 993 0.4844 MEGRENFGVVVGDEAPESFHVAPRIENNLDFSRATVPAPAPPTEGKKKRGRPRKYGPDGKPALGAVTALSPMPISSSIPLTGEFSAWKRGRGRPVESIKKSSFKFEVESPGPGEGIAYSVGANFTPHVLTVNAGEDVTMKIMSFSQQGSRAICILSATGTISNVTLRQPSSCGGTLTYEGRFEILSLSGSFMPTENGVTRSRSGGMSVSLAGPDGRVMGGGLAGLLVAAGPVQVVVASFLPGHQLEHKTKKQRVGHVSTISPSPVNLITSEEIIVSFGGVKPIMTPAAFQEENIASFNNGQDYRNSSVDDKDPLPEKESNLSQSNAEAVC* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1616 330 MobiDBLite consensus disorder prediction 30 61 - -
Gso10g1616 330 Pfam Plants and Prokaryotes Conserved (PCC) domain 126 239 IPR005175 -
Gso10g1616 330 ProSiteProfiles PPC domain profile profile. 121 262 IPR005175 -
Gso10g1616 330 MobiDBLite consensus disorder prediction 299 330 - -
Gso10g1616 330 CDD DUF296 125 239 IPR005175 -
Gso10g1616 330 SMART AT_hook_2 46 58 IPR017956 GO:0003677
Gso10g1616 330 SMART AT_hook_2 88 100 IPR017956 GO:0003677
Gso10g1616 330 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 9 318 IPR039605 GO:0003680
Gso10g1616 330 SUPERFAMILY AF0104/ALDC/Ptd012-like 123 242 - -
Gso10g1616 330 Gene3D - 126 258 - -
Gso10g1616 330 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 9 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1616 Gso-Chr10 42699229 42706469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1616 46 314 AT-hook Motif Nuclear Localized (AHL) Family AT4G25320 57.951 1.28e-88 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1616 - - gmx:100776862 627.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso10g1616 10 42699229 42706469 Gso10g1616 10 42699229 42706469 ECH
Gso16g1635 16 37025810 37033169 Gso10g1616 10 42699229 42706469 PCT
Gso9g1265 9 36162254 36168090 Gso10g1616 10 42699229 42706469 PCT
Gso10g1616 10 42699229 42706469 Gso16g1635 16 37025810 37033169 PCT
Gso10g1616 10 42699229 42706469 Gso9g1265 9 36162254 36168090 PCT