Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1602 ATGGTCGTGAGCGGAGGGAAGGGCCTCAAACGCGCCGCGAAGAAGAGAGTCACCGCCGATTTCTACGACTTCCTCACGTTCCCCACGCCGTCGCTCGCCGAAGCTGAGAACTTCGCCGGTGGACCGTTCCGCTCCAACGTGCGCGCCTTTCTGACGAAGCACGCGCTTCTTCCGCCGCCGTCCGCGCTCTTCCCGCACCTGCTGACGTGGCAGATCGTCTTCCGCGTCGGCGAGCTCACCGAGGGCCCCGACGCGCCGGTAGTGTGCCTCGACGTCGTCGAGGAGGACGTCGCCAGATCCAGATCTGTTTACTGTGATCAGTGCCGAGTTTTCGGTTGGAGCGGCCATCCGGTGTGCGGGAAACGTTACCATTTTATAATCAAAGCCGATGGGAGCTCCATTGGTGGGTACCACAAGCCGTGTATGTGCTGTGGAGACATCTTGCATTTGTCAGAATCCAAATGCAAGTCATGCAACCATGTCACTACCACTGATGATGTCGAGGATTGGGTGTACCACCAATTAGAGAACACGACTCATCTTTTACATGGCGTAGTACACACCAATGGATATGGGCACCTTCTTCGGGTTAATGGCAGAGAAGGGGGCTCTAGATTTCTTTCTGGTATTCATATTATGGATTTCTGGGATCGCCTATGCAAGACTCTTGGAGTCAGAAAAGTCAGCGTGATGGATGTTTCAAAGAAATATGGGATAGAGTATCGCTTGCTTCATGCCATTATGAAGGGACATCCATGGTATGGTGACTGGGGTTATAAATTTGGCTCTGGCAGCTACTGTCTTACACATGAATCATACAAGTCTGCTGTTGAAAGCCTATCCAATCTACCCTTGTCCACCTTTTCCCAGGGAAAGATGCCTGACTCTCGTGTGCAGGATATGATCAAATATTACCAATCTTTGTCAGAACACGAGCTTGTAAATATAAGGGACCTCTTTTGTTTCATAATGGGTTTGATTGGTGATGCTCACAAGACTGCATCAAATGTTGATGAGACAACCTGCAAGAAGCGTCGTTTTAATGCTTCTGGACTGTCAATATCTTGGGATAAGAGTGACATTGAACGTGTGGAGCAAGCCATGATCAGAGTGCTGCGTGCAGTGTCTGAGTCTAAGTGGGTGAGCTGGCGTGCTCTTAGGGGCGCAGCCTCCAAGTTGGGCTCTCCAGAGCTGCTTGATTATTGCCTTGGAGAACTGGGAGGGAAAATGGTCTATGGTGGAATGGTTGTTAATAGCCGATGCAATCCTCAAACTGGAGTTTATGAGTTCAGAGTTGAGGCTGCAACTGGTGCTTGCTATGGAATTTTAGCAAACAATAATTCTTCAGGCTCGAAGTATCCATCTGAAGAAAATCTCCTACAATGCTTGAGATATTTATACGACTCTTTGCTTCATCCTCAGATGATGGTAAACTATGAAGCAGGGACAAGGACTCTTGTAATGAGCTCAGCTCAGAAGCTTTTTGACTGCAAGCAGTTTGTAAAAGATTATAATCCTGAGATGTTGCCATTGTCAGACTCGCAGATGTTTCGCCTCTCATGTCATGTTGAACTTGTAGATGAGTTTGAAGATTCAGAAGCTATAACTCCACCAGAATTAATTGTGCTGCCCCTGAATGCCACGGTGGCTGAGCTTAAGAATCAAGCAGCAAATGCTTTCCAAGATGTATATCTAATGTTCAGAAGATTTCAAGTTGATGAGCTACATGGCTATAGCGGTGTCGACGATTCCACCCTGGTCAAGCTCTTGTTAGGATCGAGAGATGTAGTTTGTGTCCGAGGAAGATGCATTGGGAAAAATGGGTTGAGCAAGTTCCGAATGGAACGTGGACTTGAGAGGTGGACGGTAGATTGCAGCTGTGGAGCCAAGGATGATGATGGAGAGAGAATGTTGGCGTGTGATATATGTGGAGTGTGGCGACACACCAGGTGTTCTGACATCCACGACACTGATCCTGTTCCAGCACGTTTTGTTTGCCAGAAATGCCAACACTCTGAATCAAAACTCAAATCTAGTGGGCACTGCAAAGATGAGACTGTGACTAACGTTAGTGGTAGTAGTTGCTTCAGAAACGGCTTGCCAGTGCCATCTGATGTTATTTAA 2124 0.4788 MVVSGGKGLKRAAKKRVTADFYDFLTFPTPSLAEAENFAGGPFRSNVRAFLTKHALLPPPSALFPHLLTWQIVFRVGELTEGPDAPVVCLDVVEEDVARSRSVYCDQCRVFGWSGHPVCGKRYHFIIKADGSSIGGYHKPCMCCGDILHLSESKCKSCNHVTTTDDVEDWVYHQLENTTHLLHGVVHTNGYGHLLRVNGREGGSRFLSGIHIMDFWDRLCKTLGVRKVSVMDVSKKYGIEYRLLHAIMKGHPWYGDWGYKFGSGSYCLTHESYKSAVESLSNLPLSTFSQGKMPDSRVQDMIKYYQSLSEHELVNIRDLFCFIMGLIGDAHKTASNVDETTCKKRRFNASGLSISWDKSDIERVEQAMIRVLRAVSESKWVSWRALRGAASKLGSPELLDYCLGELGGKMVYGGMVVNSRCNPQTGVYEFRVEAATGACYGILANNNSSGSKYPSEENLLQCLRYLYDSLLHPQMMVNYEAGTRTLVMSSAQKLFDCKQFVKDYNPEMLPLSDSQMFRLSCHVELVDEFEDSEAITPPELIVLPLNATVAELKNQAANAFQDVYLMFRRFQVDELHGYSGVDDSTLVKLLLGSRDVVCVRGRCIGKNGLSKFRMERGLERWTVDCSCGAKDDDGERMLACDICGVWRHTRCSDIHDTDPVPARFVCQKCQHSESKLKSSGHCKDETVTNVSGSSCFRNGLPVPSDVI* 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1602 707 CDD PHD_MMD1_like 624 669 - -
Gso10g1602 707 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 681 - -
Gso10g1602 707 SMART PHD_3 624 670 IPR001965 -
Gso10g1602 707 PANTHER OS01G0877500 PROTEIN 1 681 - -
Gso10g1602 707 SUPERFAMILY FYVE/PHD zinc finger 613 672 IPR011011 -
Gso10g1602 707 Pfam PHD-finger 625 671 IPR019787 -
Gso10g1602 707 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 610 676 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1602 Gso-Chr10 42568716 42573459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1602 78 671 PHD Transcription Factor Family AT5G22260 29.560 6.40e-86 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gso10g1602 PHD 9.8e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1602 - - gmx:100818189 1464.51