Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1599 ATGGCAACTAGACTTCAGTTTGAGAATAATTGTGAAGTTGGAGTCTTCTCAAAACTTACCAATGCCTATTGTTTGTTTGCTATTGGAGGTTCCGAAAACTTCTACAGTGGATTTGAGGCTGAGTTAGCAGATGTTATTCCTGTGGTCAAGACCTCCATTGGTGGCACTCGTATCGTTGGTCGTCTTTGTGTTGGAAACAAGAACGGGCTTCTCTTGCCCCATACCACCACAGACCAAGAGCTTCAACATTTGAGAAACAGTCTACCTGATCAAGTTGCTGTTCACCGTATAGAAGAAAGATTATCCGCTCTGGGAAATTGTATAGCATGTAATGACCATGTGGCCCTCACACACACTGATCTTGACAAGGAAACTGAGGAGATGATTGCAGATGTTCTTGGAGTAGAAGTTTTCAGGCAGACTGTTGCAGGTAATATTCTCGTTGGCAGTTACTGTGTATTCTCCAACAGAGGTGGTTTGGTCCACCCTCACACCTCCATCGAAGACTTGGATGAACTTTCCACACTTCTTCAGGTTCCTTTGGTTGCCGGGACTGTTAACCGTGGTAGTGAAGTAATAGCTGCTGGGATGACGGTAAATGATTGGACAGCATTTTGTGGTTCAGACACCACAGCAACAGAACTTTCAGTGATTGAGAGTGTTTTCAAGCTGAGAGAAGCCCAACCTAGTGCCATTGTCGATGAGATGAGGAAATCACTCATTGATACTTATGTCTAA 738 0.4404 MATRLQFENNCEVGVFSKLTNAYCLFAIGGSENFYSGFEAELADVIPVVKTSIGGTRIVGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVAVHRIEERLSALGNCIACNDHVALTHTDLDKETEEMIADVLGVEVFRQTVAGNILVGSYCVFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTAFCGSDTTATELSVIESVFKLREAQPSAIVDEMRKSLIDTYV* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1599 245 Pfam eIF-6 family 4 203 IPR002769 GO:0042256|GO:0043022
Gso10g1599 245 Gene3D - 1 225 - -
Gso10g1599 245 SMART eIF6neu2 3 204 IPR002769 GO:0042256|GO:0043022
Gso10g1599 245 Hamap Translation initiation factor 6 [eif6]. 1 245 IPR002769 GO:0042256|GO:0043022
Gso10g1599 245 CDD IF6 2 223 IPR002769 GO:0042256|GO:0043022
Gso10g1599 245 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 245 - -
Gso10g1599 245 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 245 IPR002769 GO:0042256|GO:0043022
Gso10g1599 245 TIGRFAM eIF-6: putative translation initiation factor eIF-6 4 224 IPR002769 GO:0042256|GO:0043022
Gso10g1599 245 PIRSF Transl_init_IF-6 1 226 IPR002769 GO:0042256|GO:0043022
Gso10g1599 245 SUPERFAMILY Pentein 1 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1599 Gso-Chr10 42501189 42534622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1599 1 245 Eukaryotic Initiation Factors Gene Family AT3G55620 90.204 2.22e-171 470
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1599 K03264 - gmx:100306262 488.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso9g1304 9 36651171 36654977 Gso10g1599 10 42501189 42534622 PCT
Gso10g1599 10 42501189 42534622 Gso9g1304 9 36651171 36654977 PCT