Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1582 ATGACGATGGCAATGACAATGCCTCTTACTCTACGGAATAAGCTCAAGACTCTTTGTACTTGTGGTGATGGCTGGTCTTATGCTATTTTCTGGCGCTTTCATCCACGGAATTCCTTGTTGTTGACTGTGGAAGAAGCATACTATGAAGAGCATCTGGGAGAAGAAATTGCCAACATGCATCCGCAGGTCCACCTTCTGGGTGAAGGAATTGTAGGTGAAGCCGCTTCCACGGGCAAGCACAGTTGGGTGCACTCAGATGGTCAAACTCATGATTGGAATTTGACTGGCCAAAATATTTGTGAGGATGATTCTGAATTTCAGCAACAGTTCTCCTCTGGGATAAAGACTATTGTGGTGGTACCTGTCAAAGCATGGGGAGTGGTACAGTTTGGATCCAGAAAGAAGATCTTAGAGAAAGTGGAATTTTTGGAGCAAACACAAAGCGTGCTAACAGATATGGATGATGATATGGGTATGTTTGACATGCCGGGAAATTCAGTTTTACCACTAGATTGTGAAAATAATGATTTAAATGGGTTGTGGGATTCCATTTCTTCTGCAAATCCCAACAATTCCTTCCCTTCCCAATATATGACTTATGACAAAGCAATGGTTTCATTGCAAGAAGATTCTTCTTATTTTAGTGACCAATTGAAAGGTACCATGGAAGCTCAAATTGTATTATCAGATAGGGATAGTGCTGATGTGCTTTTGAAGCCTAACTCTTCTACAAACAAATTAATTGCCGAAAACCCCTATTTTGGTGTATGTGGTAGTGAATTATCTTCTTTTAATTTGTTGGAGCAACAATTGGTATCCTGTGTAAGTGCACAAGAAGATGCAGATGCGTGTTTTACAAACCAAAATGATTTTGCTGCCAGCAAACTTCTAGTTCAGGATTCAGCATTGACCTCACTGTGCAGTATGGACAGAGGGTCATTTCAAGGCAAATTACAAAATTCACTGGATAACCAATATCCAACTCAGTCTGGTGTTGTGATAGATGTTGATTTTTCCTCAAGTTCAAATGCATTGCATGGACTCTCTGAGAACTTAGAGCCAGTTGATATGTCAGAAGAAATTTTGAATTTCAGCCCTATGGAAGATCTTTGCCAGTGGTTTGGTCCTTCTCCCGAGGATAGTATCTGCGAAGCAGTAATTGCCTTGGATAACAACTTTTCTGAATCAACAGAATTTAATCCCACTTCCTTTGATCTGGTTGGAAGTAGTTCTTTAAATGATATTTCAGTGACATGCCTAGCAGAGCATAATTCCAACTCAAATGGGAAAGAAGCATCTGTGGTCATGCAAAGCACTGAAAAAGGTCTCTTTGATAGCATGGAATTTGATTTTAGCTATGATCAAGGTGATGAATGGTGGGGGAATATGCTTTCACCAGTGGTGAGTGGTGTTACTGATACTGGCTTCTCTGAATGTGTATCAGAGTTGAATACTACTGATGCATTGACTGGCACCCGGAAGAGATTATTCTCAGAGTTAGGAATTGAAGAGCTTTTGAGGGGTGGAGCAAATTACAATCCTTTTAATAGTTCTGAACTTGAGTATGAGTTATCACCCAATAAGAGCGAGACGGTAGAATCTTCATCAGTGAATAGAAATCCAATACATTTCACCAACTTTCATTGGCCTGGGGCTAGAGCAGACTTGACACAGCGACTTTGTGACTTAGACAACACAAACAATCTTCCAACCAAGAAAGATAAATTCCCAAAATTACAAACAGGCATGTGGATTGATGATAGTCATAGCATTAATATTGGGAAGGCTGTACCAGTGCACCCTCAAAAGCCAGAGGAACCCAGAAAGCCATCCAAGAAGAGGGCTAGGCCGGGGGAGAGTACTCGACCGCGGCCAAAAGATCGTCAGCAGATCCAAGACTGTATCAAAGAGTTGAGACGAATTATCCCCAATGATGGAAAGTGTAGCATTGATTCTTTGTTAGACCGCACCATCAGATACATGCTTTTCTTACAAAGTGTCCTCAAGTATTCAGACAAGCTACAGGAACCAAATGAGCCAAAGGCAAAGGAAGTGGTTTTAAAAGACAGTGGTGCGGCGGATAGCAAAAACGGGGGCATTACATGGGCATATGAAGTGGCACACCAAACAATGCTATACCCAGTTATAGTTGAGGACATGAGTCTACCTGGTCAAATGCTTATAGAGATGCTTTGTGAGGAGCAAGGCTTCTTCCTTGAGATAATTGACAAGATTCAGCGTTTCGGGCTGAATATCTTGAAAGCCAAGATGGAAAGAAGGAAGACCAAACTTTGGGCACGCTTTATTGTTGAGGCAAACAGACCCGTGACAAGGATAGAGGTGTTTTTGTACCTAATCCATCTTCTACAGGAAACAAACACCTCTGGCATTGATTCTTCTAATAAGCATTGCGATGTTATTGAGGCCAATATTTAG 2436 0.4138 MTMAMTMPLTLRNKLKTLCTCGDGWSYAIFWRFHPRNSLLLTVEEAYYEEHLGEEIANMHPQVHLLGEGIVGEAASTGKHSWVHSDGQTHDWNLTGQNICEDDSEFQQQFSSGIKTIVVVPVKAWGVVQFGSRKKILEKVEFLEQTQSVLTDMDDDMGMFDMPGNSVLPLDCENNDLNGLWDSISSANPNNSFPSQYMTYDKAMVSLQEDSSYFSDQLKGTMEAQIVLSDRDSADVLLKPNSSTNKLIAENPYFGVCGSELSSFNLLEQQLVSCVSAQEDADACFTNQNDFAASKLLVQDSALTSLCSMDRGSFQGKLQNSLDNQYPTQSGVVIDVDFSSSSNALHGLSENLEPVDMSEEILNFSPMEDLCQWFGPSPEDSICEAVIALDNNFSESTEFNPTSFDLVGSSSLNDISVTCLAEHNSNSNGKEASVVMQSTEKGLFDSMEFDFSYDQGDEWWGNMLSPVVSGVTDTGFSECVSELNTTDALTGTRKRLFSELGIEELLRGGANYNPFNSSELEYELSPNKSETVESSSVNRNPIHFTNFHWPGARADLTQRLCDLDNTNNLPTKKDKFPKLQTGMWIDDSHSINIGKAVPVHPQKPEEPRKPSKKRARPGESTRPRPKDRQQIQDCIKELRRIIPNDGKCSIDSLLDRTIRYMLFLQSVLKYSDKLQEPNEPKAKEVVLKDSGAADSKNGGITWAYEVAHQTMLYPVIVEDMSLPGQMLIEMLCEEQGFFLEIIDKIQRFGLNILKAKMERRKTKLWARFIVEANRPVTRIEVFLYLIHLLQETNTSGIDSSNKHCDVIEANI* 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1582 811 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK (WITH NO LYSINE)-LIKE PROTEIN-RELATED 9 810 - -
Gso10g1582 811 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 628 670 IPR036638 GO:0046983
Gso10g1582 811 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 9 810 IPR043561 GO:0003700|GO:0006355
Gso10g1582 811 MobiDBLite consensus disorder prediction 601 630 - -
Gso10g1582 811 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 615 664 IPR011598 GO:0046983
Gso10g1582 811 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 55 149 IPR025610 -
Gso10g1582 811 MobiDBLite consensus disorder prediction 592 630 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1582 Gso-Chr10 42288685 42293835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1582 580 799 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 48.869 4.46e-61 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso10g1582 bHLH-MYC_N 2.6e-15 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1582 - - gmx:100813558 1615.13