Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1562 ATGGCGTCAATGAACTGGCTGGATTTCTCTCTCTCCCCTCAAGAACTTCCATCACAACCTCTAAATGATGAAGAAGATCACTCTCAAACGGTGACCCCTCTCCTTGGTTTCAACTCCCACGAAATCTCAGTCACCGAATGCTTTGATCTCTCTTCATTTGCCTTAGTAGAAGCACCCAACAGAAACAATACTCATCATATAACTCCTCTAGATTATTGGAACACAAAGGGTTTGGGAACTTCATGCAGCAGTAACCAAAACATGGACAATAACCAACAACACCCGAAACTCGAAAATTTTCTTTTGGAAAAACCGGCAACCGGGGGTGGCGGTTGTCCAAAAAACACCAACTCTATAGGGTTGTCCATGATAAAGACATGGCTGAGGAAACAAATGTCATCACAGTCAGATGCTGCAAACACATCACTTTCCATGAGCACTACTAGAGTGTCAGAGTCTGGCACAGTAGCATTGCCCCTTCTAACAGCGGGTGAAGAGAGTTCCTCCTCGAAGAGTAAGCAAAGCGGAATTCTTAATGTTGACACTGTGTCCAGAAAATCCGCTGACACATTTGGAAAGAGGACTTCCATATACCGTGGTGTAAGCAGGCATAGATGGACGGGTAGATACGAGGCTCACCTGTGGGACAATAGTAGTAGAAGAGAGGGGAAAACTAGCAAAGGAAAGCAAGGAGGTTATGATAAAGAAGAAAAAGCAGCTAGAGCGTATGATTTGGCGGCACTGAAATACTGGGGAGCAACGACAACAACAACAAATTTTCCAGTAAATTTTATGTTCTCACTCTGA 807 0.4411 MASMNWLDFSLSPQELPSQPLNDEEDHSQTVTPLLGFNSHEISVTECFDLSSFALVEAPNRNNTHHITPLDYWNTKGLGTSCSSNQNMDNNQQHPKLENFLLEKPATGGGGCPKNTNSIGLSMIKTWLRKQMSSQSDAANTSLSMSTTRVSESGTVALPLLTAGEESSSSKSKQSGILNVDTVSRKSADTFGKRTSIYRGVSRHRWTGRYEAHLWDNSSRREGKTSKGKQGGYDKEEKAARAYDLAALKYWGATTTTTNFPVNFMFSL* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1562 268 ProSiteProfiles AP2/ERF domain profile. 197 261 IPR001471 GO:0003700|GO:0006355
Gso10g1562 268 Pfam AP2 domain 197 252 IPR001471 GO:0003700|GO:0006355
Gso10g1562 268 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 50 262 - -
Gso10g1562 268 SMART rav1_2 197 267 IPR001471 GO:0003700|GO:0006355
Gso10g1562 268 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 50 262 - -
Gso10g1562 268 CDD AP2 196 263 IPR001471 GO:0003700|GO:0006355
Gso10g1562 268 SUPERFAMILY DNA-binding domain 196 263 IPR016177 GO:0003677
Gso10g1562 268 Gene3D AP2/ERF domain 197 263 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1562 Gso-Chr10 42064391 42066070 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1562 185 263 AP2-EREBP Transcription Factor Family AT5G17430 37.805 2.94e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gso10g1562 AP2 1.2e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1562 K09285 - gsj:114371775 540.421