Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1556 ATGGTGGGAGTGGTGATAGAAGATGAAGTTGTTGTTGCTCCAACTAACTTTTCAATGGTTGAAGAGGGAATTTATCGCTCTAGTTTCCCTCGTTCTTCAAATTTCTCCTTTCTTGAATCTCTCAATCTTCGATCCATCATATACTTGTGCCCCGAACCCTATCCGCAAGAAAATTTAGAGTTTCTTCAATCGCAAAATATTCGGCTCTTTCACTTTGGTATTGAAGGCAAGACGGATCTCTCTGTGTCTGCCGTTAGAGATAACATATTGGAGGCTGTTAAAGTTTTAATTGATGTGAGAAATCATCCAGTTTTAATCCACTGCAACCAAGGAAAGCACCGAACTGGTTGCGTTGTTGGTTGCTTGAGAAAATTGCAGAGTTGGTGTCTATCTTCTGTGTTTGAGGAGTACAAGCGATTTGCTGGTGCTAAATATAGGACAACAGATTTAAGGTTCATAGAAACAGTTGACTTATTAAGCCTGAGACAGTGTCTTAACAGCATCATATACCAGTACCTAGGATATGCTTCAAAGAAGCTGAGGTTGCGGTATAGAGATGAGAATTCAATCAAGCCCCAGTTAACATCAGTTTAA 594 0.399 MVGVVIEDEVVVAPTNFSMVEEGIYRSSFPRSSNFSFLESLNLRSIIYLCPEPYPQENLEFLQSQNIRLFHFGIEGKTDLSVSAVRDNILEAVKVLIDVRNHPVLIHCNQGKHRTGCVVGCLRKLQSWCLSSVFEEYKRFAGAKYRTTDLRFIETVDLLSLRQCLNSIIYQYLGYASKKLRLRYRDENSIKPQLTSV* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1556 197 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 87 119 IPR000387 GO:0016311|GO:0016791
Gso10g1556 197 ProSiteProfiles Dual specificity protein phosphatase domain profile. 16 165 IPR020422 GO:0006470|GO:0008138
Gso10g1556 197 Pfam Tyrosine phosphatase family 11 157 IPR004861 -
Gso10g1556 197 PANTHER TYROSINE-PROTEIN PHOSPHATASE 7 180 - -
Gso10g1556 197 CDD PFA-DSP_Siw14 11 157 - -
Gso10g1556 197 PRINTS Plant and fungal dual specificity phosphatase signature 11 28 IPR020428 GO:0016791
Gso10g1556 197 PRINTS Plant and fungal dual specificity phosphatase signature 48 61 IPR020428 GO:0016791
Gso10g1556 197 PRINTS Plant and fungal dual specificity phosphatase signature 67 81 IPR020428 GO:0016791
Gso10g1556 197 PRINTS Plant and fungal dual specificity phosphatase signature 84 98 IPR020428 GO:0016791
Gso10g1556 197 ProSitePatterns Tyrosine specific protein phosphatases active site. 106 116 IPR016130 GO:0016311|GO:0016791
Gso10g1556 197 PANTHER TYROSINE-PROTEIN PHOSPHATASE DSP5 7 180 - -
Gso10g1556 197 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 156 IPR029021 -
Gso10g1556 197 Gene3D Protein tyrosine phosphatase superfamily 11 160 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1556 Gso-Chr10 42025031 42026783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1556 9 197 Protein tyrosine phosphatase (PTP) family AT3G02800 65.445 2.41e-95 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1556 K18045 - gmx:100808199 379.407