Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1555 ATGGAGAACAACAACAACAACAACCACAACCTCATCGTCCCTAATCCTCAAGATTCACTGTGGATGATGAATTTGAGGACTGGGGAAACAATGGATTCTGGATCTTATCCGGAGCGTCCAGGGGAGCCGGATTGTTCATATTACATGAGAACAGGCCTTTGTAGATTTGGTGCAACGTGTCGATTTAATCATCCTCCTAACAGGAAGCTGGCTATTGCCACTGCAAGGATGATAGGCGAGTTCCCAGAAAGAATAGGGCAACCAGAATGCCAGTACTATCTGAAGACAGGAACATGCAAATTTGGAGCCACATGCAAATTTCATCATCCTAAAGATCAGGCTGGAATTGCTGGAAGAGTTGCCTTAAATATTTTAGGCTATCCTCTCCGCCCTAATGAGCCTGAATGCACTTATTATTTGAGAACCGGACAATGCAAATTTGGGAACACTTGCAAATTCCACCATCCTCAACCAAGTAATATGATGCTCTCATTACGGGGTTCTCCTGTTTACCCTACCGTCCATTCTCCAACTACGCCTGGTCAGCAGTCATATGCTGGAGGAACATACATTCCTAGTCCTCGATGGCAAGGTCCTTCAAGTTATGCGCCCTTAATTCTACCTCAGGGAGTGGTTTCAGTGCCTGGGTGGAGTGCATACAGTGGTCAAATGGGGTCAATCTCTACTTCAGACAGTCCACAGCAAGCAATGAGAAACGGTCAAACATATGGAACTTCTCGTCAAGGTGAGCTTGCAGGATCACAAGGGGCATATTCTCAATTCCGTTCTGGCACCGTTCCTGTAGGGTTTTATACATTGCAGAGGGAGAACATATTTCCTGAGAGACCTGGTCAACCCGAATGCCAATTCTACATGAAGACAGGAGATTGTAAGTTTGGCGCAGTCTGTCGGTTCCACCACCCACAAGAGAGGCTAGTTCCTGCTCCTAACTGTGTCTTGAGTCCCATAGGCCTTCCTTTACGTCCTGGAGAACCTTTGTGTGTCTTCTATTCTCGTTATGGCATATGCAAATTTGGCCCAAGTTGCAAGTTTGACCACCCAATGGAAATTTTCTCTCATAATATCTCTGCATCTCCTTCAGCTGATGCCCCAAGCAGGCATCTGTTAGGATCTTCATCTGGAACTGCTGCGTTAAATTTATCTTCCGAAGGACTTGTTGAGTCAAGCTCAGCAAAGCCCAGACGGCTTTCATTATCAGAGACAAGACAGATTCCTTCTGGTGATGATGACATCGATGATGATGGATGA 1269 0.4586 MENNNNNNHNLIVPNPQDSLWMMNLRTGETMDSGSYPERPGEPDCSYYMRTGLCRFGATCRFNHPPNRKLAIATARMIGEFPERIGQPECQYYLKTGTCKFGATCKFHHPKDQAGIAGRVALNILGYPLRPNEPECTYYLRTGQCKFGNTCKFHHPQPSNMMLSLRGSPVYPTVHSPTTPGQQSYAGGTYIPSPRWQGPSSYAPLILPQGVVSVPGWSAYSGQMGSISTSDSPQQAMRNGQTYGTSRQGELAGSQGAYSQFRSGTVPVGFYTLQRENIFPERPGQPECQFYMKTGDCKFGAVCRFHHPQERLVPAPNCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMEIFSHNISASPSADAPSRHLLGSSSGTAALNLSSEGLVESSSAKPRRLSLSETRQIPSGDDDIDDDG* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1555 422 PANTHER PROTEIN PHOSPHATASE RELATED 14 421 - -
Gso10g1555 422 ProSiteProfiles Zinc finger C3H1-type profile. 130 158 IPR000571 GO:0046872
Gso10g1555 422 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 14 421 - -
Gso10g1555 422 Gene3D - 274 357 - -
Gso10g1555 422 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 330 355 IPR000571 GO:0046872
Gso10g1555 422 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 284 309 IPR000571 GO:0046872
Gso10g1555 422 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 87 111 IPR000571 GO:0046872
Gso10g1555 422 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 133 157 IPR000571 GO:0046872
Gso10g1555 422 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 41 66 IPR000571 GO:0046872
Gso10g1555 422 ProSiteProfiles Zinc finger C3H1-type profile. 328 356 IPR000571 GO:0046872
Gso10g1555 422 ProSiteProfiles Zinc finger C3H1-type profile. 282 310 IPR000571 GO:0046872
Gso10g1555 422 SUPERFAMILY CCCH zinc finger 286 312 IPR036855 GO:0046872
Gso10g1555 422 MobiDBLite consensus disorder prediction 389 422 - -
Gso10g1555 422 SMART c3hfinal6 39 66 IPR000571 GO:0046872
Gso10g1555 422 SMART c3hfinal6 328 355 IPR000571 GO:0046872
Gso10g1555 422 SMART c3hfinal6 84 111 IPR000571 GO:0046872
Gso10g1555 422 SMART c3hfinal6 130 157 IPR000571 GO:0046872
Gso10g1555 422 SMART c3hfinal6 282 309 IPR000571 GO:0046872
Gso10g1555 422 ProSiteProfiles Zinc finger C3H1-type profile. 84 112 IPR000571 GO:0046872
Gso10g1555 422 Gene3D - 117 165 - -
Gso10g1555 422 SUPERFAMILY CCCH zinc finger 44 67 IPR036855 GO:0046872
Gso10g1555 422 SUPERFAMILY CCCH zinc finger 133 158 IPR036855 GO:0046872
Gso10g1555 422 MobiDBLite consensus disorder prediction 225 249 - -
Gso10g1555 422 Gene3D - 38 116 - -
Gso10g1555 422 ProSiteProfiles Zinc finger C3H1-type profile. 39 67 IPR000571 GO:0046872
Gso10g1555 422 SUPERFAMILY CCCH zinc finger 331 356 IPR036855 GO:0046872
Gso10g1555 422 MobiDBLite consensus disorder prediction 389 411 - -
Gso10g1555 422 SUPERFAMILY CCCH zinc finger 88 113 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1555 Gso-Chr10 42009162 42012943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1555 20 421 C2H2 Transcription Factor Family AT3G02830 59.322 7.39e-173 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso10g1555 zf-CCCH 5.1e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1555 - - gmx:100802536 868.611