Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1521 ATGTGCACAGCCCTAAAGACGAATTACCAGCTTAGCGAGGAGATCGGTCGCGGTCGTTTCGGCACCATCTTCCGCTGCTTCCACCCACTCTCCAACGAACCCTACGCCTGCAAACTCATCGACAAATCCCTCCTCCATGACTCCACCGACCGCGACTGCCTCCAGAACGAACCCAAATTCATGACCCTCCTTTCACCTCACCCAAACATCCTTCAAATCTTCCATGTTTTCGAGGACGACCAATATCTCTCCATAGTAATGGATCTCTGCCAACCCCACACGCTTTTCGACCGCATGGTCGATGGTCCCATCCAGGAGTCCCAAGCCGCCGCCCTCATGAAGAACCTTCTGGAAGCTGTCGCGCACTGCCACCGCCTCGGCGTGGCCCACCGCGACATTAAACCCGACAATATTCTGTTCGATTCGGCGGACAATCTTAAACTGGCGGACTTCGGTTCCGCGGAGTGGTTTGGGGATGGGAGGAGCATGAGCGGCGTGGTGGGGACGCCGTATTACGTGGCGCCGGAGGTTCTGTTGGGGAGGGAGTACGATGAGAAGGTTGATGTGTGGAGCTGTGGGGTGATTTTGTATATAATGTTGGCGGGGATTCCCCCTTTTTACGGAGATTCTGCGGCGGAGATCTTTGAGGCTGTGGTTAGGGCTAATCTTAGGTTCCCTTCTAGAATCTTCCGGACTGTGTCCCCCGCCGCCAAGGATCTCTTGCGAAAAATGATCTGTAGGGATTCTTCTAGAAGGTTCTCCGCAGAACAAGCCTTGAGACATCCTTGGATCTTGAGTGCGGGTGACACGGCTGAACTCACTTGA 825 0.5455 MCTALKTNYQLSEEIGRGRFGTIFRCFHPLSNEPYACKLIDKSLLHDSTDRDCLQNEPKFMTLLSPHPNILQIFHVFEDDQYLSIVMDLCQPHTLFDRMVDGPIQESQAAALMKNLLEAVAHCHRLGVAHRDIKPDNILFDSADNLKLADFGSAEWFGDGRSMSGVVGTPYYVAPEVLLGREYDEKVDVWSCGVILYIMLAGIPPFYGDSAAEIFEAVVRANLRFPSRIFRTVSPAAKDLLRKMICRDSSRRFSAEQALRHPWILSAGDTAELT* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1521 274 SMART serkin_6 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g1521 274 CDD STKc_CAMK 8 263 - -
Gso10g1521 274 PANTHER SERINE/THREONINE-PROTEIN KINASE 3 273 - -
Gso10g1521 274 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Gso10g1521 274 SUPERFAMILY Protein kinase-like (PK-like) 6 266 IPR011009 -
Gso10g1521 274 Gene3D Transferase(Phosphotransferase) domain 1 93 273 - -
Gso10g1521 274 Pfam Protein kinase domain 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g1521 274 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Gso10g1521 274 Gene3D Phosphorylase Kinase; domain 1 1 91 - -
Gso10g1521 274 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 2 3 273 - -
Gso10g1521 274 ProSiteProfiles Protein kinase domain profile. 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1521 Gso-Chr10 41683972 41685319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1521 5 272 EF-hand Containing Proteins AT1G50700 38.971 1.04e-71 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gso10g1521 Pkinase 3.3e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1521 - K08794 gmx:548089 562.762