Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1515 ATGATTTGTGTTGAAGCGAAAATGAGGATTATGATAAAGGGCGGTGTTTGGAAAAACACCGAAGATGAAATCCTAAAAGCAGCTGTTATGAAATATGGCAAGAACCAGTGGGCTCGAATCTCTTCTCTCCTTGTTCGCAAATCTGCCAAGCAATGCAAAGCTCGCTGGTATGAGTGGCTCGATCCCTCCATAAAAAAGACTGAGTGGACGAGAGAAGAGGATGAGAAGCTACTTCATCTTGCTAAGCTTATGCCCACACAGTGGAGAACAATTGCTCCAATTGTTGGCCGTACCCCTTCCCAGTGTCTTGAGCGGTACGAGAAGCTCCTTGATGTAGCCTGTGTGAAGGATGAGAACTATGAGCCCGGTGATGATCCTCGGAAACTGCGTCCTGGGGAGATTGATCCAAACCCTGAGTCAAAACCTGCACGCCCCGATCCTGTTGATATGGATGAAGATGAAAAGGAGATGCTTTCTGAAGCACGAGCCCGGTTAGCCAACACAAAGGGCAAGAAAGCAAAAAGGAAAGCTAGGGAGAAACAGCTTGAGGAAGCCAGGAGGCTTGCTTCTTTACAAAAGAAGAGAGAATTGAAGGCTGCTGGAATTGATATTAGGCAGCGGAAGAGAAAAAGGAAAGGAATAGATTACAATGCAGAAATTCCTTTTGAAAAAAGGCCCCCTCCAGGGTTTTTTGATGTTACAGATGAAGATAGACCAGTGGAACAGCCCCAGTTCCCTACTACAATTGAAGAACTTGAAGGGAAAAGGAGGGTTGATGTTGAGGCACAATTAAGAAAACAGGACATTGCAAAAAATAAAATTGCACAAAGGCAAGATGCTCCATCTGCCATATTGCATGCCAACAAGCTGAATGACCCAGAAACAGTAAGAAAGAGGTCAAAATTGATGCTTCCACCCCCGCAGATTTCAGATCAGGAATTGGATGATATTGCAAAGTTGGGTTATGCTAGTGACCTTGCAGGAAGTCAGGAACTTGCTGAAGGTAGTCGTGCAACACAGGCTCTTCTGACTAATTATGCACAGACACCTGGCCAAGGAATGACTCCTTTGCGAACCCCTCAGAGAACACCGGCTGGTAAAGGTGATGCTATCATGATGGAAGCTGAAAATCTGGCCAGGCTGAGGGAGTCTCAAACACCATTGTTAGGAGGAGAGAACCCAGAGTTGCATCCTTCAGATTTTTCCGGTGTCACTCCTAAGAAAAAGGAGATTCAGACTCCAAACCCAATGCTGACTCCTTCTGCAACTCCTGGAGCTGCAGGTCTCACTCCTAGAATTGGCATGACACCAACAAGAGATGGTTTTTCTTTTAGCATGACACCAAAGGGAACTCCTCTTAGGGATGAGCTACATATTAATGAGGACATGAATATGCATGACAGCACTAAACTTGAGCTACAGAGACAGGCTGATATGAGAAGAAGTTTGCGTTCTGGTTTAGGAAGCCTTCCACAGCCCAAAAATGAGTACCAGATAGTGATGCCACCTGTTCTAGAAGATGCCGAAGAGCCTGAGGAGAAAATTGAAGAGGATATGTCTGATAGAATAGCTAGAGAAAAAGCGGAAGAAGAGGCAAGGCAGCAGGCATTGCTTAGAAAGCGATCAAAAGTTCTTCAACGGGAACTTCCTAGGCCTCCTACAGCATCATTGGAGCTTATAAGAAATTCCTTGATGCGAACTGACGGGGACAAGAGTTCCTTTGTTCCACCAACCTCTATTGAGCAAGCTGACGAGATGATTAGAAGGGAGCTTCTAACTTTGCTGGAGCATGACAATGGTAAGTATCCACTTGATGATAAAGTGATTAAGGAGAAAAAGAAAGGAGCCAAGCGTGCTGTAAATGGGTCTGCTGTCCCTGTGATAGAAGATTTTCAGGAAGATGAAATGAAAGAGGCTGATAAGTTGATAAAGGAAGAGGCCCTGTATCTTTGTGCAGCAATGGGTCATGAAGATGAACCCCTTGATGAATTTATTGAAGCACACAGAACCTGTCTCAATGATCTTATGTACTTTCCTACCCGTAATGCATATGGTCTCTCTAGTGTTGCTGGAAACATGGAAAAACTAGCAGCTTTGCAGAATGAGTTTGAGAATGTGAGAAACAAATTGGATGATGGTAAGGAGAAGATGGTACGGCTTGAGAAGAAGGTGATGGTTCTCACGCAAGGTTATGAGATGAGAGTAAAGAAAAGCCTGTGGCCACAAATTGAGGCCACTTTCAAGCAGATGGATGTAGCTGCAACTGAGTTAGAATGCTTTAAAGCTTTGCAAAAGCAGGAACAATTGGCAGCATCACATAGGATAAACAATCTGTGGGGTGAAGTACAGAAGCAAAAAGAACTTGAGAAAACTTTGCAAAATAGGTATGGGAGTCTAATTGAAGAGCTGGAAAAGATGCAAAATGTCATGGACCAATGCAGATTACTAGCACAACAGCAAGAAGAAATTGAAGCAAACAACCATGCTCGTGAGTCAACTGAGATCATTGAGAGCAAGGCTGGTGAAACTGATGTACAGAGTACAGAAAATTGTGAAACTGTACCTGACTCAGTAGAGCATGGACATGCTCTAGCAGTTGAGTCATCTGATGATGGAACTGCTGACCAGCAAGTAGATATTGTGCATGACCAGGCTACTTCTAGCGTTAGCCATGACATGGATGTAGATTCTGATAAATTGGCTAATCCTACACCAGCTGCAGAGAATGTCGATGGAAAACTGGAAGTTACTGCTACTGCCAGCTATACTGATGATGGGAAGACCATGCTAGAAATGGGTGCTGCAGTGGAAGTAAGTAGCAGCCCCAATCATGATGTAGTTGCGGATGCTGTAAACTCACATGATAACAGCATGGAAGAAACCAATGCTGTTGGGGAGGAGACAAATTAG 2910 0.4423 MICVEAKMRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDVACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTKGKKAKRKAREKQLEEARRLASLQKKRELKAAGIDIRQRKRKRKGIDYNAEIPFEKRPPPGFFDVTDEDRPVEQPQFPTTIEELEGKRRVDVEAQLRKQDIAKNKIAQRQDAPSAILHANKLNDPETVRKRSKLMLPPPQISDQELDDIAKLGYASDLAGSQELAEGSRATQALLTNYAQTPGQGMTPLRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPKKKEIQTPNPMLTPSATPGAAGLTPRIGMTPTRDGFSFSMTPKGTPLRDELHINEDMNMHDSTKLELQRQADMRRSLRSGLGSLPQPKNEYQIVMPPVLEDAEEPEEKIEEDMSDRIAREKAEEEARQQALLRKRSKVLQRELPRPPTASLELIRNSLMRTDGDKSSFVPPTSIEQADEMIRRELLTLLEHDNGKYPLDDKVIKEKKKGAKRAVNGSAVPVIEDFQEDEMKEADKLIKEEALYLCAAMGHEDEPLDEFIEAHRTCLNDLMYFPTRNAYGLSSVAGNMEKLAALQNEFENVRNKLDDGKEKMVRLEKKVMVLTQGYEMRVKKSLWPQIEATFKQMDVAATELECFKALQKQEQLAASHRINNLWGEVQKQKELEKTLQNRYGSLIEELEKMQNVMDQCRLLAQQQEEIEANNHARESTEIIESKAGETDVQSTENCETVPDSVEHGHALAVESSDDGTADQQVDIVHDQATSSVSHDMDVDSDKLANPTPAAENVDGKLEVTATASYTDDGKTMLEMGAAVEVSSSPNHDVVADAVNSHDNSMEETNAVGEETN* 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1515 969 Pfam Myb-like DNA-binding domain 17 77 - -
Gso10g1515 969 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 64 IPR017930 -
Gso10g1515 969 MobiDBLite consensus disorder prediction 886 908 - -
Gso10g1515 969 CDD SANT 17 60 IPR001005 -
Gso10g1515 969 Coils Coil 174 194 - -
Gso10g1515 969 ProSiteProfiles Myb-like domain profile. 61 110 IPR001005 -
Gso10g1515 969 MobiDBLite consensus disorder prediction 120 156 - -
Gso10g1515 969 Gene3D - 67 121 - -
Gso10g1515 969 MobiDBLite consensus disorder prediction 406 420 - -
Gso10g1515 969 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 8 805 - -
Gso10g1515 969 SMART sant 65 112 IPR001005 -
Gso10g1515 969 SMART sant 13 62 IPR001005 -
Gso10g1515 969 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 114 IPR017930 -
Gso10g1515 969 Coils Coil 689 723 - -
Gso10g1515 969 Gene3D - 12 66 - -
Gso10g1515 969 Pfam pre-mRNA splicing factor component 413 661 IPR021786 -
Gso10g1515 969 CDD SANT_CDC5_II 62 113 - -
Gso10g1515 969 SUPERFAMILY Homeodomain-like 40 114 IPR009057 -
Gso10g1515 969 ProSiteProfiles Myb-like domain profile. 9 60 IPR001005 -
Gso10g1515 969 Coils Coil 789 826 - -
Gso10g1515 969 MobiDBLite consensus disorder prediction 388 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1515 Gso-Chr10 41608014 41614786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1515 8 832 MYB-Related Transcription Factor Family AT1G09770 76.598 0.0 1242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso10g1515 Myb_Cef 2.4e-62 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1515 K12860 - gmx:100790369 1859.73