Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1513 ATGGTGAGAACTCCATGTTGTGAGAAGATGGGCTTGAAGAAGGGATCTTGGACACGAGAAGAAGATCAGATATTGATTTCTCACATTCAACGATATGGCCATGGAATCTGGCGTGCCCTTCCAAAACAAGCTGGTCTGTTAAGGTGTGGTAAGAGTTGTAGACTTCGTTGGATAAATTATTTGAGTCCAGATATTAAACGAGGGAAATTCAGCAAGGAAGAAGAAGAGATCATCCTCAAATTACATGGAATTCTTGGAAATAGATGGGCTACTATTGCGACAAGATTACCAGGACGAACCGACAACGAAATAAAGAATTTTTGGCACACCCATTTGAAGAAGAGGCTTGAGAGAAGTAAAGTGATAAATACCTACTCTAATCCCTTGCAAGAGGCACAAACAGCTTCTAGTGCAAGGACTTTAATAAGTGTTCCACGAGTAGCGGTGGAAGCTTCGGGTGCTTCTTCTAGTAGAAATCCACCTATTGTAGGTCTAGGATTTTATGGTGTTGCCTCTTCTGATATTCTAGGACAAATAATTGGCAATAGTTCTCACAGTCGTCAGATCGATAAAGAACTGGAATTTCGGTCTAATGTGTATATGAACAGTCATCACAAGGGTATGAAAATGTAA 633 0.4044 MVRTPCCEKMGLKKGSWTREEDQILISHIQRYGHGIWRALPKQAGLLRCGKSCRLRWINYLSPDIKRGKFSKEEEEIILKLHGILGNRWATIATRLPGRTDNEIKNFWHTHLKKRLERSKVINTYSNPLQEAQTASSARTLISVPRVAVEASGASSSRNPPIVGLGFYGVASSDILGQIIGNSSHSRQIDKELEFRSNVYMNSHHKGMKM* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1513 210 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gso10g1513 210 CDD SANT 69 112 IPR001005 -
Gso10g1513 210 Gene3D - 68 140 - -
Gso10g1513 210 PANTHER MYB TRANSCRIPTION FACTOR 1 187 - -
Gso10g1513 210 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Gso10g1513 210 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gso10g1513 210 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso10g1513 210 CDD SANT 16 61 IPR001005 -
Gso10g1513 210 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso10g1513 210 SMART sant 66 114 IPR001005 -
Gso10g1513 210 SMART sant 13 63 IPR001005 -
Gso10g1513 210 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gso10g1513 210 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 187 - -
Gso10g1513 210 Gene3D - 11 67 - -
Gso10g1513 210 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1513 Gso-Chr10 41593345 41594411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1513 1 119 MYB Transcription Factor Family AT2G31180 73.109 2.67e-64 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso10g1513 Myb_DNA-binding 1.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1513 K09422 - gmx:100797027 430.639