Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1509 ATGAAATCCATTGAGGAGAAATACCTGAAGGCTCACATGATAGTCGAGCCTCAATCATCTATGGTGAAGCTATTAGATGATTTATGTGGAAGTTACTTGAAGCTGGGCTTGAGTTTAAGTCCAAACGGGTCAACTTCCAAGTTTGCTAATTCACGCAATGTGACATGTCTGCCACTGCAAACTGTTACTGAAGATGACAAGAATTCCTTTCACTTTCTTGATGACATAACAAAAGGTTCAGAGAATGTTAAAATATCATTGTTAGATGAAACTGGAAGTGAGGACGTGCCACAGTTTAATTACATACCCTATAATGTAATATATCAAGATGCTAATGTAAATATTTCACTTGCTCGTATTGCGGATGAGGGTTGCTGTGCTGATTGTGCTGGCGACTGTCTTTCCTTATCACTTCCTTGTGCATGTTCTCAAGAAACAGGTGGAGAGTTTGCTTACACTCCACGAGGCTTGTTGAAAGATGATTTTTTAAAAGCTTGCATGTCTATGAAATTGGAACCTCTAGATCATCATTTTGTGTATTGCCAAGAATGTCCATTGGAGAGGTCTAGGAATGACATCGTTCCCGAACCATGCAAGGGACATCTGGTTAGGAAGTTTATCAAGGAATGCTGGAGGAAATGTGGTTGTGACATGCAGTGTGGAAATCGGGTAGTGCAACGGGGTTTAAGATGTAAATTGCAGGTGTTTTTGACTCAAGAAGGAAAGGGATGGGGCGTCAGAACACTAGAAGATTTGCCTAAGGGATGTTTTGTATGTGAATATGCAGGGGAAATATTAACCAATACAGAATTATATGAAAGGATTATGCAGAAAAGCGGCAATGACAGACATACATATCCTGTAACCCTTGATGCAGATTGGGGCTCGGAAGGGGTGTTAAAGGATGAGGAGGCACTATGCTTAGATGCAACGTATAATGGAAATGTTGCAAGGTTTATCAATCATAGGTGCTGTTTCAAAATTCAGCAACCATATTTTTTATGCACGATGTAA 1014 0.4004 MKSIEEKYLKAHMIVEPQSSMVKLLDDLCGSYLKLGLSLSPNGSTSKFANSRNVTCLPLQTVTEDDKNSFHFLDDITKGSENVKISLLDETGSEDVPQFNYIPYNVIYQDANVNISLARIADEGCCADCAGDCLSLSLPCACSQETGGEFAYTPRGLLKDDFLKACMSMKLEPLDHHFVYCQECPLERSRNDIVPEPCKGHLVRKFIKECWRKCGCDMQCGNRVVQRGLRCKLQVFLTQEGKGWGVRTLEDLPKGCFVCEYAGEILTNTELYERIMQKSGNDRHTYPVTLDADWGSEGVLKDEEALCLDATYNGNVARFINHRCCFKIQQPYFLCTM* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1509 337 ProSiteProfiles SET domain profile. 231 337 IPR001214 GO:0005515
Gso10g1509 337 Pfam SET domain 243 325 IPR001214 GO:0005515
Gso10g1509 337 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 29 325 - -
Gso10g1509 337 ProSiteProfiles Pre-SET domain profile. 125 228 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso10g1509 337 Gene3D SET domain 53 331 IPR046341 -
Gso10g1509 337 SMART set_7 231 335 IPR001214 GO:0005515
Gso10g1509 337 CDD SET_SETDB-like 97 324 - -
Gso10g1509 337 Pfam Pre-SET motif 76 223 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso10g1509 337 SMART preset_2 73 215 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso10g1509 337 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 29 325 - -
Gso10g1509 337 SUPERFAMILY SET domain 83 325 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1509 Gso-Chr10 41564162 41566967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1509 207 324 C2H2 Transcription Factor Family AT2G23740 47.059 1.04e-24 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gso10g1509 Pre-SET 1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1509 - - gmx:100796495 697.197