Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1505 ATGTTGTCTAGATTCTATTTGAAAGCTCGTTTAGAGATGGAGGGAAAAACTGAGGATGAAGTGGTGGATATTGAGAGTGCTTCTAGTGGTTCTTTCAATGATGATTCAGATGATGAGGAATCTTTAGTTCCTGAAAAAGATGATGGAATGCATCTTGGGGAGCCGTTAACAGAAGAGGAAATACAAGATCTTATTTCTGAGTTGTTAGAAGTGGAGAGTAAGGCTGCAGAGGCTCAAGAGGCTCTTGAAGAGGAGTCTCTTTCTAAAGTGGAGAGTGAAGTTAGACAAGAATTGAAGCAAAATCTTCAGGGGGATGATTTGGAAACTGCTGTTGCTGATGAGATGGCCACTTTTAAAGAAGAGTGGGAAGCTGTTCTGGATGACCTTGAAACCGAAAGTGCCCACTTACTGGAACAACTTGATGGGGCTGGCATTGAGCTTCCTAGCCTTTATAAGTTGATTGAAAGAGAAGCTCCTAATGTTTGCTCCACTGAAGCATGGAAAAAGAGGAATCATTGGGTTGGCTCTCTGGCAACTGCTGAAATTGCTGAGTCAATTGCTGATGCTGAGAAACATCTTCAAGTAAACAGACCTGTTAGAAGGCGACATGGTAAATTATTGGAAGAGGGTGCTAGTGGCTTTCTCCAAAAAAAGCTTTGTGATGAAACCCAGGAGCCAATAAAGACTGAAACTAAGGGGGATTGGGATTTGTTCAATAAAATAGTTTCTGATGGGAGTGGCATTGATGCTTCATTTGGCAGTAAGCATTGGGTGTCTGTTTATTTGGCCAGCACTCCACAGCAAGCTGCCTTGATGGGACTCAAATTTCCTGGAGTTGATGAGGTGGAGGAGATTGATGATGTTGATGGCAATTCTACGGATCCATTTATTGCAGCTGCCATTGCAAATGAAAGAGAATTAGATCTTTCTGATGAGCAAAGGAGGCAATTTAAAAAGGTCAAAGAAGAGGATGATGCAATTGTTGATAGGAAACTTCAAATCCGTTTGAAACATAGGAGGCAAAAAAGGAAAAGTAAACAACGAGAAATGAGCACACCTATCCTTTTGGTGGAGAACCACATACAGAAACCTTCATCTGTTGATACTTTAAGCCCTGCTATGAAGGAAGGAACTAGCAATGATGGGAAAATTGTGTCTGACAATGGCAAGGATACATGTGTGCTTATGGGGGCCGATAACATTAATGTTTTTGATGCCAGCCATCATCTTGACAAAGAAAAACTTACGAGTACTGGTGGTTTGTCAGATGACATTGAACAGAGAGGAATCAAACGTGTAAAAAGTGGTGAGCTTGATGCTGACAATAAAAAGTGTAGAATTGTTATTATTGATAGTGGTAATGAAGCAGAGGTCAGTGAAAATAAATTAGATTGCAATACTCAAGAGGTAAAAGAAGATTTATGTGACAATGGTGGTGATTCTCTTCCTTCGGAGTGTCTGGATGAAAAATTTTGGTGCACAGTTTGTGATAAAGTGGCCCTTGAAGTGCATCCACACCCTTTCTTGAAAGTGATTACTTGTGGAGATTGCAATTGCTTATTAAAAGAAAAGACACACAAAAAGGATATGGGACAAGATTGTTCGGAGGGTTACTGTACATGGTGTGGAGGAAGCAATGAATTAGTTAGTTGTAAATTATGCAAGGGTTTATTCTGCACCAAATGTTTAAAGAAGAATCTTGGTGTAGAATTGTATGCTGGAATGCAGGACACTAGCTGGCATTGTTGCTCTTGCCATCCAAATCTTTTGCAAAAACTGTCCTTGCAACTAGAGAAAGCTGTGGGGTCTGCTGATATAATAGTTTCCAGTTCTGGTAGTGATTCAGATAGTTCAGATGATTCAGATAGTTCAGATGATTCAGATGCAAAGGTTAATGTTACAATCAGCTCCAAGCGAAGACACAAAAAGAAGATTCGGAGGATACTCGATGATGCTGAATTAGGAGAAGAGACAAAGAGGAAAATTGCAATTGAAAAGGAACGTCAGGAACGCCTGAAGTCTTTGCGAGGACAGTTTTCTGCTTCGTCATTTGAAATGAGCTCTGACGGCTGTAATGGGAATTTATCAGAAAGTGCAAGTGTTGAAGTTCTTGGTGATGCACTAGCAGGTTACATAGTGAATGTTGTGAGGGAGAAAGGTGAAGAAGCTGTTAGAATTCCTCCTAGCATTTCCGCTAAACTGAAGGCTCATCAGATTACTGGAATAAGATTCATGTGGGAAAATATAATACAATCAATCAGAAAAGTGAAGTCTGGGGATAAAGGTCTTGGATGTATTCTAGCTCATACCATGGGCCTTGGTAAAACTTTTCAGGTGATAGCTTTTTTGTACACTGCAATGAGATGTGTTGATTTGGGGTTAAGAACTGCGCTTATAGTCACACCTGTCAACGTGCTACATAATTGGCGTCAAGAGTTCATCAAGTGGAGACCATCTGAGTTAAAGCCTCTCAGGGTCTTCATGCTGGAAGATGTATCAAGAGATAGAAGGCCAGAATTGCTTGCAAAATGGAGATCTAAAGGTGGTGTCTTTTTGATTGGTTATACTGCTTTCCGGAACTTGTCTTTTGGGAAGCATGTGAAAGATCGACACATGGCCAGAGAAATTTGCCATGCTTTGCAGGATGGACCTGACATTCTTGTTTGTGATGAAGCCCATATGATAAAAAATACTAAGGCTGATGTAACTCAAGCCTTGAAACAAGTAAAATGCCAGAGAAGAATTGCGCTTACTGGATCACCTCTTCAAAACAATCTAATGGAATATTACTGTATGGTTGATTTTGTAAGAGAAGGTTTTCTTGGAAGCAGCCATGAATTTCGAAACCGCTACCAAAATCCTATAGAGAATGGACAGCACACCAATTCAACTCTGACCGATGTGAAAATTATGAACCAGAGGTCTCATATCCTCTATGAACAGTTAAAAGGATTTGTTCAAAGAATGGACATGAATGTGGTGAAGAAGGATCTACCACCCAAAACTGTCTTCGTGATAACTGTCAAGCTATCTCCCTTGCAGAGAAAATTGTACAAGAGGTTCCTTGATGTGCATGGGTTCACTACTCAGGTGCATCCTGAAATGTTAAGGAAGAGATGTTTTTTTGCTGGGTACCAGGCATTAGCTCGGATATGGAATCACCCTGGGATCTTGCAGTTGACTAAAGAAGTCAAGGATTATGTAAAACACGAAGATGCTGTTGAGAATTTTCTTGTGGATGATAGTTCCAGTGACGAGAATTCTGATTATAATGTACTTGCTGGAGAGAAGATGAGATATGCAAATGACTTGCTGCAAAGGAAAGATGATAATGGCTTTTTCCTGAAGGGTTGGTGGAATGATCTTCTTCATGGAAAAATTTATAAAGAGATTGATCACAGTGGCAAAATGGTTTTGCTGATGGAAATACTAACTATGAGTTCTGATGTGGGTGATAAGGTGTTAGTTTTCAGTCAGAGCATACCAACCCTAGACCTCATTGAACTTTATCTCTCAAGGATACCTCGACGTAGCAAACGAGAGAAGTTTTGGAAGAAAGGAAAAGATTGGTATAGGTTGGATGGAAGGACTGAGAGTTCTGAGAGGCAGAAGCTTGTTGAGAGATTTAATGAGCCTTTGAATAAGAGGGTAAAGTGCACTCTGATTTCAACTAGAGCAGGCTCTTTGGGTATTAATCTTCATGCAGCTAATCGTGTTGTTATAGTTGATGGTTCTTGGAATCCAACATATGATCTCCAGGCCATCTATCGATCATGGAGGTATGGGCAGAAAAAGCCTGTGTTTGCTTATCGATTGCTGGCTCATGGAACTATGGAGGAGAAGATATATAAGCGCCAGGTAACAAAGGAGGGGCTTGCTGCTAGGGTGGTTGATAGACAGCAGGTGCATAGGACCATTTCTAAAGAAGAAATGCTGCATCTGTTTGAGTTTGGTGATGATGACAACCCTGAGACTTTGGTTGATCTAAGTCAAGATAATGAACATCAAGACAACCCAATTTTGGTTGGGCATTCACTGAAACACACAGCACCACATTCAAATGGAAGTAGTTATTCTGATAAGTTAATGGAAAGCTTACTTAGCAAGCATCATCCAAGGTGGATTGCCAATTATCATGAACATGAATCCCTGTTACAAGAAAATGAAGAGGAAAAGCTATCGAAAGAGGAGCAAGATATGGCTTGGGAGGTTTACCAGAAATCGTTGGAATGGGAAGAAGTGCAGAGAGTACCACTTGGTGAGTCTATTATGCCCGAACAGAAGCCAGAAATGCCAATTGCGATGCCCCAAAATGTTTCAGAAAGCTGCAGCATCTTGCCAACTAAACTAAGCAGGCGTTTCACGATACGGAAATGCACCAACCTTGCGCATATGTTGACACTTAGAAGTCAAGGAACAAAATTTGGATGCAGTACTGTCTGTGGGGAATGCGCCCAGGAGATTAGGTGGGAAGACTTGAAGAAGAGATAG 4491 0.4079 MLSRFYLKARLEMEGKTEDEVVDIESASSGSFNDDSDDEESLVPEKDDGMHLGEPLTEEEIQDLISELLEVESKAAEAQEALEEESLSKVESEVRQELKQNLQGDDLETAVADEMATFKEEWEAVLDDLETESAHLLEQLDGAGIELPSLYKLIEREAPNVCSTEAWKKRNHWVGSLATAEIAESIADAEKHLQVNRPVRRRHGKLLEEGASGFLQKKLCDETQEPIKTETKGDWDLFNKIVSDGSGIDASFGSKHWVSVYLASTPQQAALMGLKFPGVDEVEEIDDVDGNSTDPFIAAAIANERELDLSDEQRRQFKKVKEEDDAIVDRKLQIRLKHRRQKRKSKQREMSTPILLVENHIQKPSSVDTLSPAMKEGTSNDGKIVSDNGKDTCVLMGADNINVFDASHHLDKEKLTSTGGLSDDIEQRGIKRVKSGELDADNKKCRIVIIDSGNEAEVSENKLDCNTQEVKEDLCDNGGDSLPSECLDEKFWCTVCDKVALEVHPHPFLKVITCGDCNCLLKEKTHKKDMGQDCSEGYCTWCGGSNELVSCKLCKGLFCTKCLKKNLGVELYAGMQDTSWHCCSCHPNLLQKLSLQLEKAVGSADIIVSSSGSDSDSSDDSDSSDDSDAKVNVTISSKRRHKKKIRRILDDAELGEETKRKIAIEKERQERLKSLRGQFSASSFEMSSDGCNGNLSESASVEVLGDALAGYIVNVVREKGEEAVRIPPSISAKLKAHQITGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRCVDLGLRTALIVTPVNVLHNWRQEFIKWRPSELKPLRVFMLEDVSRDRRPELLAKWRSKGGVFLIGYTAFRNLSFGKHVKDRHMAREICHALQDGPDILVCDEAHMIKNTKADVTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRYQNPIENGQHTNSTLTDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRKLYKRFLDVHGFTTQVHPEMLRKRCFFAGYQALARIWNHPGILQLTKEVKDYVKHEDAVENFLVDDSSSDENSDYNVLAGEKMRYANDLLQRKDDNGFFLKGWWNDLLHGKIYKEIDHSGKMVLLMEILTMSSDVGDKVLVFSQSIPTLDLIELYLSRIPRRSKREKFWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHAANRVVIVDGSWNPTYDLQAIYRSWRYGQKKPVFAYRLLAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDDNPETLVDLSQDNEHQDNPILVGHSLKHTAPHSNGSSYSDKLMESLLSKHHPRWIANYHEHESLLQENEEEKLSKEEQDMAWEVYQKSLEWEEVQRVPLGESIMPEQKPEMPIAMPQNVSESCSILPTKLSRRFTIRKCTNLAHMLTLRSQGTKFGCSTVCGECAQEIRWEDLKKR* 1497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1505 1496 SMART helicmild6 1165 1262 IPR001650 -
Gso10g1505 1496 SMART ultradead3 730 951 IPR014001 -
Gso10g1505 1496 CDD ADDz_ATRX 493 587 - -
Gso10g1505 1496 ProSiteProfiles ADD domain profile. 481 613 IPR025766 -
Gso10g1505 1496 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1142 1310 IPR001650 -
Gso10g1505 1496 MobiDBLite consensus disorder prediction 609 631 - -
Gso10g1505 1496 Pfam SNF2-related domain 756 1057 IPR000330 GO:0005524|GO:0140658
Gso10g1505 1496 MobiDBLite consensus disorder prediction 16 55 - -
Gso10g1505 1496 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 994 1326 IPR027417 -
Gso10g1505 1496 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 720 988 IPR027417 -
Gso10g1505 1496 Coils Coil 119 139 - -
Gso10g1505 1496 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 756 939 IPR014001 -
Gso10g1505 1496 Pfam Helicase conserved C-terminal domain 1138 1262 IPR001650 -
Gso10g1505 1496 Coils Coil 1378 1398 - -
Gso10g1505 1496 PANTHER RAD54-LIKE 41 1494 - -
Gso10g1505 1496 Gene3D - 707 988 IPR038718 -
Gso10g1505 1496 Gene3D - 999 1345 IPR027417 -
Gso10g1505 1496 Coils Coil 61 88 - -
Gso10g1505 1496 CDD SF2_C_SNF 1130 1273 - -
Gso10g1505 1496 PANTHER RAD54-LIKE 41 1494 IPR044574 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1505 Gso-Chr10 41499620 41541561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1505 764 1315 RAD5 or RAD16-like Gene Family AT5G43530 25.472 1.08e-30 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gso10g1505 SNF2_N 3.9e-50 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1505 K10779 - gmx:100794911 2879.35