Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1495 ATGTCTACCGCAGCGCAACCCAAGGCCAAGAAAACGGCGTCGTCCAAGAAGCCCCTCTCCCACCCTCCCTTCGCCGTGATGATAGCAGAGGCGATTGCGAGTCTGAAAGAGAGAACCGGTTCGAGCCAATACGCGATAACCAAATACATCGAAGGGAAGCACAAGGAGTTGCCTGCAACCTACAAGAAGCTTGTCCTCGTTCATCTCAAGAAATCTGTTGCTGCTGGCAAGCTTGTTAAGGTGAAAAACTCCTTTAAGCTCGCACCGACTAAGCCTGCTCCGGTTAAGGCCGCTGCTCCCAAAAAGCCAACCAAAGCTGCCACTAAGCCCGCTTCCAAGCCCAAAGCTGCTACTCCTAAGAAAAAGGCTGTTGCCAAGCCCAAGTCCAAAGCTGCGGCCACCACTGCCAAGCCCAAGTCTAAGCCCGCTAAGGTCGCGGCCAAGAAGGTCGCTGCTAAGCCAGCTAAGAAGAAGACACCCGTAAAGGCCGTGAAGAAGCCCAAGAGTGTCGTGAAGAAACCTAAGAGCGTGAAATCACCAGCGAAGAAGACTAAGGCTAAGACTAAGAAGTGA 573 0.5288 MSTAAQPKAKKTASSKKPLSHPPFAVMIAEAIASLKERTGSSQYAITKYIEGKHKELPATYKKLVLVHLKKSVAAGKLVKVKNSFKLAPTKPAPVKAAAPKKPTKAATKPASKPKAATPKKKAVAKPKSKAAATTAKPKSKPAKVAAKKVAAKPAKKKTPVKAVKKPKSVVKKPKSVKSPAKKTKAKTKK* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1495 190 MobiDBLite consensus disorder prediction 1 20 - -
Gso10g1495 190 CDD H15 20 100 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gso10g1495 190 MobiDBLite consensus disorder prediction 142 190 - -
Gso10g1495 190 SUPERFAMILY "Winged helix" DNA-binding domain 17 102 IPR036390 -
Gso10g1495 190 Gene3D - 16 93 IPR036388 -
Gso10g1495 190 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 20 89 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gso10g1495 190 MobiDBLite consensus disorder prediction 86 190 - -
Gso10g1495 190 Pfam linker histone H1 and H5 family 21 88 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gso10g1495 190 PANTHER HISTONE H1 2 187 - -
Gso10g1495 190 SMART h15plus2 18 84 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gso10g1495 190 PRINTS Histone H5 signature 7 28 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gso10g1495 190 PRINTS Histone H5 signature 34 51 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gso10g1495 190 PRINTS Histone H5 signature 108 122 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gso10g1495 190 PRINTS Histone H5 signature 147 164 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gso10g1495 190 PRINTS Histone H5 signature 169 188 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gso10g1495 190 PANTHER LINKER HISTONE H1 AND H5 FAMILY PROTEIN 2 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1495 Gso-Chr10 41345829 41346775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1495 22 161 Single Myb Histone (SMH) Gene Family AT1G72740 28.873 4.44e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1495 K11275 - gmx:100785055 151.754