Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1490 ATGGTGTCAAGTCAGCTGGTGAAAGTGAAAAGAGATACGCTACGACCATGCATGACATGCCCTCTCTGCCATAACTTCTTCAAAGATGCCACCACCATCTCTACGTGCCTTCACACCTTTTGCAGGAAATGCATATATGAGAAACTCTCGGATGAGGAGATGGATTGCTGTCCTGTGTGCAATATTGACTTAGGCTGCCTTCCGGTGGAGAAACTCAGGCCAGACCATAATTTGCATGACATAAGGGCAAAAATATTCCCTTTTAAAAGAAAAAAGATCAAGGCCCAAGAAGTTTTGTCTTCAATATCATTGCCTGCAAAAAGGAAGGAAAGATCACTTTCATCATTGGTAGTCAGTGCTCCCAAAGTTTCAATGCAACCTGGCTTTACAGGAAAGAGAACAAAAAACAGTACAAGAAAGGCTGCCGCTTTACGTGGATGCAGTTTCCTTCTTGACGAATCCATAAAGAAGGAACAAGCAAATGGTGACGATAATATGGATTCTTCCATGCCTGAACCTTCTAAGAAGCATAAGCCCCATGAAGATACAGAGAACAATGTGGAACATACAGAAGGGAAGGTTGATCTCTGGACACCACTGAACTGTCTTGTTGAAGCTGCCAACAGAACAAAGTCCTCCAGGTCAAATTCACAAGCAACTCCTCTTGCCAAATTAGAGTCCCCAACTACTCCTCATGGTGGACAAGATACATCTGAAACTACAACCAAAACAGACCTACCTGCTTCTGCCAAGAGTGAATTAAACATTCCAAAATCCAAAAATAAGGATACTGGACATAAAACAATATTTGGAGATGACAAGGATGCAAACAGCTTGCCTTCAGGACCAGGGAAGCGAAGAAGGTTGCGTCCTGCTGGTCAGAAAAGAGTTGCTGCATCTGAGATGTCTGCCTCTTCCCCAGCCCCACTAGATACAACAGGGGGCAAGTGCAACAGGAAAAACAGTCCTATTTGGTTTTCATTAGTTGCTTCAGAGGACCAGAAAGGAGATGTTCCCTTGCCACAGATCTCAGCATGTTACTTAAGAATAAAGGATGGTGCGGTGCCTGTCTCATTTATTCAGAAGTACCTTGTGAAGAAACTTAATCTTGCCTGTGAAGCAGAGGTGGAAATAATGTGCCGGGGTCAGCCAGTGCTCCCATCTTTACAACTGCATAATTTAGTAGATCTATGGTTCCGGACAGCATCAACCTCAAAAAAGATACCAGCATCAGTGGGGTCCTCAGCCAAAGATTTTGTGATGGTTTTATCATATTGTCGAAAGGCCTTGCCTCCTTGA 1299 0.4373 MVSSQLVKVKRDTLRPCMTCPLCHNFFKDATTISTCLHTFCRKCIYEKLSDEEMDCCPVCNIDLGCLPVEKLRPDHNLHDIRAKIFPFKRKKIKAQEVLSSISLPAKRKERSLSSLVVSAPKVSMQPGFTGKRTKNSTRKAAALRGCSFLLDESIKKEQANGDDNMDSSMPEPSKKHKPHEDTENNVEHTEGKVDLWTPLNCLVEAANRTKSSRSNSQATPLAKLESPTTPHGGQDTSETTTKTDLPASAKSELNIPKSKNKDTGHKTIFGDDKDANSLPSGPGKRRRLRPAGQKRVAASEMSASSPAPLDTTGGKCNRKNSPIWFSLVASEDQKGDVPLPQISACYLRIKDGAVPVSFIQKYLVKKLNLACEAEVEIMCRGQPVLPSLQLHNLVDLWFRTASTSKKIPASVGSSAKDFVMVLSYCRKALPP* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1490 432 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 110 IPR013083 -
Gso10g1490 432 MobiDBLite consensus disorder prediction 299 316 - -
Gso10g1490 432 ProSiteProfiles Zinc finger RING-type profile. 20 61 IPR001841 -
Gso10g1490 432 SMART ring_2 20 60 IPR001841 -
Gso10g1490 432 MobiDBLite consensus disorder prediction 158 193 - -
Gso10g1490 432 SUPERFAMILY RING/U-box 14 84 - -
Gso10g1490 432 MobiDBLite consensus disorder prediction 256 273 - -
Gso10g1490 432 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 4 430 IPR044807 GO:0004842
Gso10g1490 432 MobiDBLite consensus disorder prediction 208 316 - -
Gso10g1490 432 MobiDBLite consensus disorder prediction 158 191 - -
Gso10g1490 432 ProSitePatterns Zinc finger RING-type signature. 36 45 IPR017907 -
Gso10g1490 432 PANTHER UBIQUITIN PROTEIN LIGASE DRIP2, PUTATIVE-RELATED 4 430 - -
Gso10g1490 432 MobiDBLite consensus disorder prediction 208 249 - -
Gso10g1490 432 Gene3D - 308 408 - -
Gso10g1490 432 Pfam Zinc finger, C3HC4 type (RING finger) 20 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1490 Gso-Chr10 41308624 41314084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1490 1 351 C3H Transcription Factor Family AT2G30580 43.342 2.59e-84 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1490 K16277 - gmx:100783999 872.848