Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1486 ATGATTAACTTCGAAGAAACCGAGTTGCGACTCGGCCTCCCTGGCGGGTCTGCGAGTGATCACAACGAGTCAACAACGGTCAAGGGCAGTGGTGGAAAGAGAGGCTTCCCTGAAACTGCTTCTGTTGATTTGAAGCTTAATCTTTCTTCCAGTGATGACTCTGCCTCAGATTCACCTTCATCTGCGTCTACAGAGAAGACTACCACTGCTGCACCTCTTCCTCCTTCTCGAGCCAACGACCCTGCAAAACCACCTGCAAAGGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGTTCAAAGGAACAAGAATGAAGAGGAAGCAGCTTTCGTGAAGGTGAGCATGGATGGTGCACCGTATCTACGAAAGGTGGACATAAAGTTGTACAAGAGCTACCAGGAGCTGTCAGATGCGCTGGCTAAGATGTTCAGTTCCTTCACGATTGAAAAATGTGGGTCCCAAGGGATGAAGGACTTTATGAATGAGACCAAATTGATAGACCTTTTGAACGGCTCTGATTATGTACCCACTTATCAAGACAAGGACGGAGACTGGATGCTCGTCGGTGACGTGCCCTGGGAAATGTTCGTTGAATCATGCCAGCGCCTTCGCATAATGAAAGGTTCTGAGGCTATCGGCCTTGCACCAAGAGCCGTGGAAAAGTGCAAGAACAGAAGCTGA 696 0.4871 MINFEETELRLGLPGGSASDHNESTTVKGSGGKRGFPETASVDLKLNLSSSDDSASDSPSSASTEKTTTAAPLPPSRANDPAKPPAKAQVVGWPPVRSFRKNIVQRNKNEEEAAFVKVSMDGAPYLRKVDIKLYKSYQELSDALAKMFSSFTIEKCGSQGMKDFMNETKLIDLLNGSDYVPTYQDKDGDWMLVGDVPWEMFVESCQRLRIMKGSEAIGLAPRAVEKCKNRS* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1486 231 ProSiteProfiles PB1 domain profile. 113 213 IPR000270 GO:0005515
Gso10g1486 231 MobiDBLite consensus disorder prediction 1 89 - -
Gso10g1486 231 Gene3D - 107 225 - -
Gso10g1486 231 Pfam AUX/IAA family 6 222 IPR033389 -
Gso10g1486 231 PANTHER AUXIN-INDUCED PROTEIN AUX28 2 224 - -
Gso10g1486 231 MobiDBLite consensus disorder prediction 43 74 - -
Gso10g1486 231 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 224 IPR003311 GO:0005634|GO:0006355
Gso10g1486 231 SUPERFAMILY CAD & PB1 domains 109 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1486 Gso-Chr10 41258542 41261885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1486 107 216 B3 DNA Binding Superfamily AT1G19220 31.818 6.06e-09 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gso10g1486 AUX_IAA 1.2e-81 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1486 K14484 - gmx:100781847 419.853