Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1485 ATGGCAGGTAATAGCAGCTCGGAGGGGTTGGTCGATGATTTCTTCGAACAGATCTTAGCAGTGCCTGAAGCTGCTGCTTTCAGAGGAGCTGCTGGGTTAATGCCTCTGGGCTTGAATTTGGAGCAAGCTGGCTTTCTAAGACACCAACACCAAATTAACGTTGACGACGTTGTTCATGTTAATGTTGATGATGCCACCATTCACCACCATCACCTCACTCTCCACAATAACACCACCTCCTCATCACCTTCTTCCACTGCACCAATCACCCAGGATAGGGATTCGATGCATATGAGAGGCTTATTTTCCGCGTTTGGACAACTCCATACTCCTACTCTTGCTCACTCTATCCGCCCCACGCTGCCATCGCCTCCACCCCCTCGTCAGCCACAACTCCACCTCCACCATCATAATAACCAACAGCAGTTTCAGGGCCAACCAGCTGCAGCTCCAGCATCAATGGCTGCTATGCCACAACCACCTGGGATCCGCCCTCGTGTGAGAGCAAGAAGAGGACAAGCCACAGATCCCCACAGTATTGCTGAGCGGTTGCGTCGTGAAAGAATCGCAGAAAGAATGAAGGCATTGCAGGAATTAGTTCCCAGCATCAATAAGACGGACAGAGCGGCGATGCTTGATGAAATTGTTGACTATGTGAAGTTCCTAAGGCTCCAGGTTAAGGTCCTGAGCATGAGTAGACTGGGAGGAGCTGGTGCAGTTGCTCAGCTTGTTGCTGATGTTCCCCTTTCTGCAGTGGAGGGGGATCAGGACATAGAAGGTGTATCCAATGAGCAAGCCTGGGACAAGTGGTCCAATGATGGCACAGAACAACAGGTGGCTAAGCTTATGGAAGAAGATGTTGGAGCAGCTATGCAATTTCTTCAGTCCAAGGCACTTTGTATCATGCCAATATCTCTAGCCTCATCCATTTTCTGCATGCCTCAATCGGAAGCATCAACAGGCATCAAACCTGAATCTAACAGTCACTGA 990 0.498 MAGNSSSEGLVDDFFEQILAVPEAAAFRGAAGLMPLGLNLEQAGFLRHQHQINVDDVVHVNVDDATIHHHHLTLHNNTTSSSPSSTAPITQDRDSMHMRGLFSAFGQLHTPTLAHSIRPTLPSPPPPRQPQLHLHHHNNQQQFQGQPAAAPASMAAMPQPPGIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSINKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSAVEGDQDIEGVSNEQAWDKWSNDGTEQQVAKLMEEDVGAAMQFLQSKALCIMPISLASSIFCMPQSEASTGIKPESNSH* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1485 329 MobiDBLite consensus disorder prediction 115 177 - -
Gso10g1485 329 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 171 232 IPR036638 GO:0046983
Gso10g1485 329 Gene3D - 168 230 IPR036638 GO:0046983
Gso10g1485 329 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 8 316 - -
Gso10g1485 329 PANTHER DEHYDROGENASE, PUTATIVE, EXPRESSED-RELATED 8 316 - -
Gso10g1485 329 SMART finulus 179 228 IPR011598 GO:0046983
Gso10g1485 329 Pfam Helix-loop-helix DNA-binding domain 178 222 IPR011598 GO:0046983
Gso10g1485 329 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 173 222 IPR011598 GO:0046983
Gso10g1485 329 MobiDBLite consensus disorder prediction 133 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1485 Gso-Chr10 41247158 41252235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1485 143 327 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 72.581 3.19e-78 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso10g1485 HLH 3.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1485 - - gmx:100781299 493.426