Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1481 ATGGATAGGGTATTCTCAGTGGACGATATCTCCGATCATTTCTGGCCGCCGCCTCCGATCCCCGTCTCCGGCGCCAACACCTCCTCTCAGATGAGCCGCAGCGCCTCCGAGTGGGCCTTTCAGCGCTTCATCCAGGAAGCTTCCGCCTCCGCACCCTCTCCTCCGTCTTCTTCCTCCCCCGCCGACGTCGTATTCGTGGAGATCGATGATCAGCCCAAACCCACCCCTCCGCCTCCGTCACACGGCGGCGTTCTGCCCAGTGACCCTGGTCCCGTGGCCCTTGACTCCGAGGAATACCAGGCCTTTCTCAAGAGCAAGCTCAACCTCGCATGCGCCGCCGTCGCCATGACTAGGGGATCTTTGGCTAAATCTCAAGACCCGTCCCCTTTTTCTGATGGTGGATCACAGCCGACTAATCCTTCTCTAGTTGGATCTCAGACTACTTCTAAAGGATCTATTCCTTCTGGAAATGATCAATCTAAGTTACAAGATAAAGATACCAATGCACCAGTTGGGATTCCTTCCATACCTGCCATACAAAAGAAACCTGCTGTTGCAATTAGGCCATCTACAAGTGGATCATCAAGAGAACAGTCAGATGATGAGGACATTGAGGGAGAGACATCTATGAATGACAACACAGACCCTGCTGATGTAAAACGAGTAAGGAGGATGCTATCCAATAGGGAGTCAGCCCGTCGCTCTAGAAGAAGAAAGCAGGCTCATTTAACTGACCTAGAAACACAGGTTTCTCAATTAAGAGGTGAAAATTCTACCTTGTTAAAGCGCCTTACTGATGTTAGTCAGAAATACAGCGACTCTGCTGTTGACAACAGAGTTTTAAAAGCTGATGTTGAAACATTAAGAGCAAAGGTGAAGATGGCTGAAGAGACCGTCAAAAGAATTACTGGGTTGAACCCAATGCCTCATGCCATGTCTGATATATCATCATTGGGCCTGCCATCATTTGATGGAAGAAGCCCTTCAGACACTTCAGCTGATGCATCTGTTCCTGTGCAAGATGATCCACATCATCACTTCTATCAACCCACATTGAATAATCCTATTCCCAGTCATGATCAGATAGTCAACAATGGTTTGGGGGGCATTTCTTCAATTGAAAATGTGCAGCAGCAGAACGCTGCAGCAGTGGTAGGTGGGAACAAGATAGGTCAAACAGCATCCCTGCAGCGGGTGGCTAGCTTGGAACATCTTCAGAAGCGGATTCGTGGTGGACCTCCATCTGAGCAGTAA 1254 0.4928 MDRVFSVDDISDHFWPPPPIPVSGANTSSQMSRSASEWAFQRFIQEASASAPSPPSSSSPADVVFVEIDDQPKPTPPPPSHGGVLPSDPGPVALDSEEYQAFLKSKLNLACAAVAMTRGSLAKSQDPSPFSDGGSQPTNPSLVGSQTTSKGSIPSGNDQSKLQDKDTNAPVGIPSIPAIQKKPAVAIRPSTSGSSREQSDDEDIEGETSMNDNTDPADVKRVRRMLSNRESARRSRRRKQAHLTDLETQVSQLRGENSTLLKRLTDVSQKYSDSAVDNRVLKADVETLRAKVKMAEETVKRITGLNPMPHAMSDISSLGLPSFDGRSPSDTSADASVPVQDDPHHHFYQPTLNNPIPSHDQIVNNGLGGISSIENVQQQNAAAVVGGNKIGQTASLQRVASLEHLQKRIRGGPPSEQ* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1481 417 Coils Coil 278 298 - -
Gso10g1481 417 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 223 238 IPR004827 GO:0003700|GO:0006355
Gso10g1481 417 SUPERFAMILY Leucine zipper domain 220 270 IPR046347 GO:0003700|GO:0006355
Gso10g1481 417 MobiDBLite consensus disorder prediction 119 243 - -
Gso10g1481 417 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 218 270 IPR004827 GO:0003700|GO:0006355
Gso10g1481 417 CDD bZIP_plant_GBF1 221 272 IPR045314 GO:0003700|GO:0006355
Gso10g1481 417 Gene3D - 219 274 - -
Gso10g1481 417 PANTHER BASIC LEUCINE ZIPPER 63 1 405 - -
Gso10g1481 417 MobiDBLite consensus disorder prediction 24 60 - -
Gso10g1481 417 PANTHER BZIP TRANSCRIPTION FACTOR 1 405 - -
Gso10g1481 417 Pfam Basic leucine-zipper C terminal 287 414 IPR020983 -
Gso10g1481 417 MobiDBLite consensus disorder prediction 71 85 - -
Gso10g1481 417 Pfam bZIP transcription factor 219 271 IPR004827 GO:0003700|GO:0006355
Gso10g1481 417 MobiDBLite consensus disorder prediction 121 166 - -
Gso10g1481 417 MobiDBLite consensus disorder prediction 214 229 - -
Gso10g1481 417 SMART brlzneu 216 280 IPR004827 GO:0003700|GO:0006355
Gso10g1481 417 Coils Coil 236 263 - -
Gso10g1481 417 MobiDBLite consensus disorder prediction 1 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1481 Gso-Chr10 41209517 41212727 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1481 1 308 bZIP Transcription Factor Family AT4G02640 41.768 4.17e-52 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gso10g1481 bZIP_C 1.1e-47 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1481 K25784 - gmx:100170702 777.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2062 19 49181817 49187069 Gso10g1481 10 41209517 41212727 PCT
Gso3g2101 3 46327372 46331492 Gso10g1481 10 41209517 41212727 PCT
Gso10g1481 10 41209517 41212727 Gso19g2062 19 49181817 49187069 PCT
Gso10g1481 10 41209517 41212727 Gso3g2101 3 46327372 46331492 PCT