Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1474 ATGGAGCAGTATGAAATACTTGAGCAAATTGGAAAAGGTGCTTTTGGTTCAGCGCTTCTTGTGAGACATAAGCATGAAAAGAAAAAATATGTGTTGAAGAAGATTCGCCTTGCTCGGCAAACTGAGCGCTCTCGTAGATCTGCACACCTGGAGATGGAGCTTATCTCTAAATTTAGAAACCCATTCATTGTGGAGTACAAAGATTCATGGGTAGAAAAGGGTTGTTATGTCTGCATCATTATAGGTTATTGTGAGGGGGGAGATATGGCAGAAGCTATAAAGAAAGCTAATGGTATCCTGTTTCCTGAGGAGAAACTTTGTAAGTGGCTCGTTCAACTTCTTATGGCTCTTGAATACTTGCACATGAACCACATTCTCCACCGTGATGTCAAGTGTTCAAATATCTTCTTGACGAAAGATCATGACATACGTCTCGGTGATTTTGGACTTGCCAAAATGTTGACTTCTGATGATCTTGCTTCCTCTGTTGTGGGAACTCCTAGCTACATGTGCCCTGAGCTCCTTGCTGATATTCCTTATGGTTCTAAATCAGACATTTGGTCCTTGGGATGTTGTATATATGAAATGACAGCACATAAGCCTGCATTCAAAGCATTTGATATACAGGCATTGATTAACAAGATTAATAAGTCCATAGTGGCTCCACTGCCAACAAAATATTCTAGTTCATTTCGAGGTCTTGTTAAAAGTATGCTGCGGAAAAATCCAGAGCTGAGGCCCAGTGCTTCGGAGCTGCTTGGGCACCCACATCTTCAACCTTATGTTCTTAAGGTCCATCTCAAACTCAACAGCCCCAGACAAAGCACATTGCCAGTTCACTGGCCAGAATCCAACTGTATGAAGAAAACTAGATTTTTGGTGCCAGAAGATTATCCTGTTTCCATCTATAGGGATAAGCGACATTCTTTCACCAATGATCGGACTCTAAATCCTAGTGTATCTGGAGCCGATCAAGATTCTGTATGTTCTACTCTAGAAATAGATTGTACTCCTGACCATTTGAATCAAAGACTAGCAGAACTACGTATTGGAAATAGCCATCAAGTGAAGTCAATCCAGAAGCCTGTTGTTTCCAGAACTTCTAGCATTATTGTTAAGACTCCAAAATTCACTTCCTCAAAAGTCTCAGCCACCAACAAGAAATCAATGGAATCCTCAAAGAATCATAAGATGCTTCCCCTTTCACAAAATACCACAAAATCTGCTAATACTAATCGCAGAGCATCATTTCCACTGCCAACAAGGGGTGGTATTCGGCAGCCTCCTTGCAGGTCCGTCAGTTTGCTTAGTCACGTGTCTTCACCAGATATCTCAGTCAATTCTCCACGGATTGATAAGATGGCTGAATTCCCATTAACTTCATATGAAGATTCTTTGTTCCCTATCAAGAGAGCATCATCCTCTGCACGAGGTTCCTCAGGCTTCCCATCTTATAGCAACCATTCAACTGTGATAGACAAATGCACGGTAGAGGTGTATGATACAGCCTCTAACAAGCCTGGTTGTATGGATGCTTGGCAGGGAATCAAGCAGAGCATGTTAAAGGAGATTGATGAGGATAAAAGTGGTTCCTCTGATCAAAATGCAACTGCAGGTGCTTCAAGCCACACCTCTTCTGACTTGCGCCGTCGACAATTTGACCCATCATCATTCCAACAAAGAGCTGAAGCTTTAGAAGGCTTGCTTGAATTTAGTGCAAGATTGCTACAGCAGGCAAGGTATGATGAACTTGGGGTTCTGTTGAAACCATTTGGGCCTGGAAAGGTTTCCCCAAGGGAAACTGCTATCTGGTTGAGTAAGAGCTTCAAAGAGAACACTTTCAACCCAGAAGAATCCATGTAA 1863 0.4219 MEQYEILEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQTERSRRSAHLEMELISKFRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKANGILFPEEKLCKWLVQLLMALEYLHMNHILHRDVKCSNIFLTKDHDIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTAHKPAFKAFDIQALINKINKSIVAPLPTKYSSSFRGLVKSMLRKNPELRPSASELLGHPHLQPYVLKVHLKLNSPRQSTLPVHWPESNCMKKTRFLVPEDYPVSIYRDKRHSFTNDRTLNPSVSGADQDSVCSTLEIDCTPDHLNQRLAELRIGNSHQVKSIQKPVVSRTSSIIVKTPKFTSSKVSATNKKSMESSKNHKMLPLSQNTTKSANTNRRASFPLPTRGGIRQPPCRSVSLLSHVSSPDISVNSPRIDKMAEFPLTSYEDSLFPIKRASSSARGSSGFPSYSNHSTVIDKCTVEVYDTASNKPGCMDAWQGIKQSMLKEIDEDKSGSSDQNATAGASSHTSSDLRRRQFDPSSFQQRAEALEGLLEFSARLLQQARYDELGVLLKPFGPGKVSPRETAIWLSKSFKENTFNPEESM* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1474 620 SUPERFAMILY Protein kinase-like (PK-like) 1 305 IPR011009 -
Gso10g1474 620 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g1474 620 CDD STKc_Nek 3 258 - -
Gso10g1474 620 MobiDBLite consensus disorder prediction 386 417 - -
Gso10g1474 620 PANTHER SERINE/THREONINE-KINASE NEK4 1 605 - -
Gso10g1474 620 MobiDBLite consensus disorder prediction 531 546 - -
Gso10g1474 620 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Gso10g1474 620 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g1474 620 MobiDBLite consensus disorder prediction 524 555 - -
Gso10g1474 620 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g1474 620 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 605 - -
Gso10g1474 620 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Gso10g1474 620 MobiDBLite consensus disorder prediction 386 428 - -
Gso10g1474 620 Gene3D Transferase(Phosphotransferase) domain 1 84 272 - -
Gso10g1474 620 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1474 Gso-Chr10 41130904 41137172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1474 10 259 MAP Kinase Kinase Kinase AT1G53570 31.765 3.97e-36 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Gso10g1474 Pkinase 1.5e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1474 K08857 - gmx:100788588 1234.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2051 19 49092747 49099090 Gso10g1474 10 41130904 41137172 PCT
Gso3g2091 3 46257769 46264556 Gso10g1474 10 41130904 41137172 PCT
Gso10g1474 10 41130904 41137172 Gso19g2051 19 49092747 49099090 PCT
Gso10g1474 10 41130904 41137172 Gso3g2091 3 46257769 46264556 PCT