Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1428 ATGTGTTTGCCCGAGGGAGAGAGAGACAGAGAGAGAGCCATGGCACTAGAAGCAGTGGTATTTCCACAATCACAAGACCCTTTTGGTAGTGGTTACGGATCAGTGAATACTAAGGACTTCTACAACTACACCTTGTTGGCTGCTACTTATGAACAACAACACATCAACAAAGAAGAAGAACAAGGTGGTGCTTCTATCTCTACTTTTCAACCAGAGACTAGTAATTACCCTTATGGAGATTGGACCACCAGTTCCTCCTCATCCATGTTACCCCACTTGAATAATGAACTTCAAGAAACCACTACTACTAGTAGTAACACCTTAGATAGCTTAAACACTCGTCCCAAGAGGCGCAGAGCCAAAAGCAGAAAGAACAAGGAAGAGATTGAGAACCAAAGAATGACTCATATTGTTGTCGAGCGCAATAGAAGAAAGCAGATGAATGAGTATCTTTCTGTTCTTCGCTCTCTCATGCCAGACTCTTATATCCAAAGGGGTGATCAAGCTTCTATAATTGGAGGTGCTGTTAACTTTGTGAAGGAGCTTGAGCAGAGGTTGCATTTTCTTGGTGCTCAGAAAGAAGGAGAAGGGAAATCTGATGATGGTGGTGCAACAAACATGCCCTTTTCTGAGTTCTTCACCTTTCCGCAGTATTCAACAGGTGGTGGTGGTGGTGGTGGTTCTGATAATTCTGCAGCCATAGGTGAAGACGTGAGTGAGGTTAAGTGTGGCATTGCTGACATAGAAGTGACCATGGTGGAAAGCCATGCAAATCTCAAAATAAGATCCAAGAAATGCCCCAAGCAGCTCTTGAAGCTGGTTTCTGGTTTGCATACCGTGCGCCTCACAATCTTGCACCTAAATGTTACTACCACTGGTGAAGTTGTTCTCTACTCCCTCAGTGTTAAGGTAGAAGATGATTGCAAGTTGGGATCAGTTGATGATATAGCAGCAGCTGTGTATCAGATGCTAGATAGGATTCAGCAAGAGGCAATGTTGAATTAA 1005 0.4358 MCLPEGERDRERAMALEAVVFPQSQDPFGSGYGSVNTKDFYNYTLLAATYEQQHINKEEEQGGASISTFQPETSNYPYGDWTTSSSSSMLPHLNNELQETTTTSSNTLDSLNTRPKRRRAKSRKNKEEIENQRMTHIVVERNRRKQMNEYLSVLRSLMPDSYIQRGDQASIIGGAVNFVKELEQRLHFLGAQKEGEGKSDDGGATNMPFSEFFTFPQYSTGGGGGGGSDNSAAIGEDVSEVKCGIADIEVTMVESHANLKIRSKKCPKQLLKLVSGLHTVRLTILHLNVTTTGEVVLYSLSVKVEDDCKLGSVDDIAAAVYQMLDRIQQEAMLN* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1428 334 Gene3D - 117 196 IPR036638 GO:0046983
Gso10g1428 334 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 14 334 - -
Gso10g1428 334 Pfam Helix-loop-helix DNA-binding domain 132 183 IPR011598 GO:0046983
Gso10g1428 334 PANTHER MAX DIMERIZATION, MAD 14 334 - -
Gso10g1428 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 131 194 IPR036638 GO:0046983
Gso10g1428 334 SMART finulus 137 188 IPR011598 GO:0046983
Gso10g1428 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 131 182 IPR011598 GO:0046983
Gso10g1428 334 MobiDBLite consensus disorder prediction 98 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1428 Gso-Chr10 40689975 40691494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1428 14 304 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 46.326 3.42e-69 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso10g1428 HLH 1.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1428 - - gmx:100811408 612.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1997 19 48582352 48584480 Gso10g1428 10 40689975 40691494 PCT
Gso3g2038 3 45802751 45804933 Gso10g1428 10 40689975 40691494 PCT
Gso10g1428 10 40689975 40691494 Gso19g1997 19 48582352 48584480 PCT
Gso10g1428 10 40689975 40691494 Gso3g2038 3 45802751 45804933 PCT