Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1427 ATGAATAACCCAAATGGAGGAATCTGTTTCCTTCTCTTTCTCTTCCTCTTTCCTTTTGCGGCGGCGCAACCTGCCACCAACCAAAACCAATCCTATTACAACAAGTTCAGCCCTTCCATGGCCATCATAATCGTCATCCTCATCGCCGCCCTCTTTCTAATGGGCTTCTTCTCCATCTACATCCGCCACTGCTCCGACTCCCCCTCCGCCAGCATCCGCAACCTCGCCGCCGCCACTGGACGCTCACGGCGCGGCACCCGCGGCCTCGAGCAGGCGGTGATCGACACCTTCCCGACGCTGGAGTACTCGGCGGTGAAGATCCACAAGCTGGGAAAGGGAACTCTGGAGTGCGCTGTGTGCTTGAACGAGTTCGAGGACACCGAAACGCTGCGTTTAATCCCCAAGTGTGACCACGTGTTCCACCCCGAGTGCATCGACGAGTGGCTAGCTTCCCACACCACTTGCCCCGTTTGCCGCGCCAACCTCGTCCCTCAGCCCGGCGAGTCCGTCCACGGAATCCCAATCCTCAACGCTCCTGAGGACATCGAGGCCCAACACGAAGCCCAAAACGACCTCGTCGAGCCCGAACAGCAACAGCAAGACCCCAAGCCTCCCGTTCCCACTGAACCTCAAGTGCTGTCATTAAACCAGACGCTGAACCGGAACCGCACCAGAGGCTCCCGGTCGGGCCGGCCGCGGCGATTCCCGCGGTCTCACTCGACCGGTCATTCTTTAGTCCTGCCGGGCGAAGACACTGAACGGTTCACTTTGCGGCTTCCCGAGGAAGTTAGAAAGCAGATATTGCAGAACCCGCAACTGCATCGCGCGAGAAGCCTCGTTATCTTACCGAGAGAAGGTAGTTCGCGGCGGGGGTATCGAACCGGTGAAGGAAGTAGCAGAGGGAGATCGTCGAGGCGGTTGGACCGGGGGTTTAAGTCGGACCGGTGGGTTTTCACCATGGCGCCGCCTTTTTTGGTGAGAGCGTCGTCGATTAGGTCGCCCAGGGTGGCCAATAACGGTGGCGAAGGAACTTCCGCTGCTGCGTCTTTGCCTCCGCCGCCTGCTGTGGAGTCTGTTTGA 1080 0.5917 MNNPNGGICFLLFLFLFPFAAAQPATNQNQSYYNKFSPSMAIIIVILIAALFLMGFFSIYIRHCSDSPSASIRNLAAATGRSRRGTRGLEQAVIDTFPTLEYSAVKIHKLGKGTLECAVCLNEFEDTETLRLIPKCDHVFHPECIDEWLASHTTCPVCRANLVPQPGESVHGIPILNAPEDIEAQHEAQNDLVEPEQQQQDPKPPVPTEPQVLSLNQTLNRNRTRGSRSGRPRRFPRSHSTGHSLVLPGEDTERFTLRLPEEVRKQILQNPQLHRARSLVILPREGSSRRGYRTGEGSSRGRSSRRLDRGFKSDRWVFTMAPPFLVRASSIRSPRVANNGGEGTSAAASLPPPPAVESV* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1427 359 MobiDBLite consensus disorder prediction 284 307 - -
Gso10g1427 359 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 10 305 - -
Gso10g1427 359 MobiDBLite consensus disorder prediction 336 359 - -
Gso10g1427 359 MobiDBLite consensus disorder prediction 289 307 - -
Gso10g1427 359 MobiDBLite consensus disorder prediction 188 249 - -
Gso10g1427 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 164 IPR013083 -
Gso10g1427 359 SUPERFAMILY RING/U-box 111 166 - -
Gso10g1427 359 ProSiteProfiles Zinc finger RING-type profile. 117 159 IPR001841 -
Gso10g1427 359 SMART ring_2 117 158 IPR001841 -
Gso10g1427 359 MobiDBLite consensus disorder prediction 210 225 - -
Gso10g1427 359 CDD RING-H2_EL5_like 116 159 - -
Gso10g1427 359 Pfam Ring finger domain 116 159 IPR001841 -
Gso10g1427 359 PANTHER RING FINGER DOMAIN-CONTAINING 10 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1427 Gso-Chr10 40653872 40655227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1427 8 359 Rapid Response to Elicitors AT3G05200 48.056 9.47e-97 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1427 K10664 - gmx:100810865 609.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1996 19 48562010 48563494 Gso10g1427 10 40653872 40655227 PCT
Gso3g2037 3 45771473 45772931 Gso10g1427 10 40653872 40655227 PCT
Gso10g1427 10 40653872 40655227 Gso19g1996 19 48562010 48563494 PCT
Gso10g1427 10 40653872 40655227 Gso3g2037 3 45771473 45772931 PCT