Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1420 ATGGATCATCAAGGGCATGGGCATGGGCACGGCCAGAACCCATCTATGGGGGTTGTTGGAAATGGACCTCAATTTCCTTATGGTTCTAATCCATACCAGGCCAGCCATATGACAGGTTCACCTGGTATGGTTGTTGCATCACCTGGGACCATTCAATCCACTGGTCAACCACCTTCAACTCAGCTAGGACAACATCAACTTGCTTATCAGCACATGCATCAGCAACAACAGCAGCAGCTGCGGCAACGTCTCCAAGCCTTCTGGGCAAACCAATATCAAGAAATCGAGAAGGTGACCGATTTCAAGAACCATAGCCTCCCCTTGGCGAGGATCAAGAAGATTATGAAGGCTGACGAGGATGTCAGAATGATATCGGCTGAGGCACCGGTCATATTTGCGAGGGCATGTGAAATGTTCATATTGGAGTTAACCTTGCGCTCTTGGAATCACACAGAAGAGAACAAAAGGAGAACACTTCAAAAGAATGATATTGCAGCAGCCATCACAAGAACTGATATCTTTGATTTTTTGGTTGACATTGTGCCTAGGGAGGACTTGAAAGATGAAGTGCTTGCTTCAATGCCAAGAGGAGATGTGCCTGTTACAGGGCCTCCTGAGGCACTTCCTTATTGCTATATGCCACCTCAACAAGTTGGAGCTGCTGGTGTCATGATGGGTAATAAGCCTGTGATAGACCCATATGCTCAACAGACTCATCCCTACAACATGGCACCACAACTGTGGCCACAACCACCACCACCACCAGAGCAGCAACAATCATCTCCAGATCAGTAG 795 0.4767 MDHQGHGHGHGQNPSMGVVGNGPQFPYGSNPYQASHMTGSPGMVVASPGTIQSTGQPPSTQLGQHQLAYQHMHQQQQQQLRQRLQAFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASMPRGDVPVTGPPEALPYCYMPPQQVGAAGVMMGNKPVIDPYAQQTHPYNMAPQLWPQPPPPPEQQQSSPDQ* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1420 264 MobiDBLite consensus disorder prediction 45 63 - -
Gso10g1420 264 MobiDBLite consensus disorder prediction 1 63 - -
Gso10g1420 264 Pfam Core histone H2A/H2B/H3/H4 58 168 IPR007125 GO:0003677
Gso10g1420 264 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 7 264 - -
Gso10g1420 264 MobiDBLite consensus disorder prediction 235 264 - -
Gso10g1420 264 MobiDBLite consensus disorder prediction 245 264 - -
Gso10g1420 264 Gene3D Histone, subunit A 67 183 IPR009072 GO:0046982
Gso10g1420 264 SUPERFAMILY Histone-fold 68 177 IPR009072 GO:0046982
Gso10g1420 264 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 7 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1420 Gso-Chr10 40609773 40611481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1420 1 227 CCAAT-HAP5 Transcription Factor Family AT1G08970 60.000 1.37e-80 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Gso10g1420 Histone 3.5e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1420 K08066 - gmx:100776494 459.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1992 19 48523443 48526403 Gso10g1420 10 40609773 40611481 PCT
Gso3g2032 3 45740673 45743402 Gso10g1420 10 40609773 40611481 PCT
Gso10g1420 10 40609773 40611481 Gso19g1992 19 48523443 48526403 PCT
Gso10g1420 10 40609773 40611481 Gso3g2032 3 45740673 45743402 PCT