Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1398 ATGGATCAGGATGAGCAAGATAGAGCATTGCCGATTGCAAATGTGAGTCGAATCATGAAGCAAATCCTTCCCCCTAGTGCAAAGATCTCCAAAGAAGGTAAACAAGTAATGCAAGAGTGTGTGACAGAGTTCATAAGTTTTGTGACTGGCGAGGCATCTGACAAGTGTCACAAGGAGAATCGCAAGACCGTTAATGGGGATGACATCTGTTGGGCTCTAAGTTCATTAGGGTTTGACAACTATGCTGAGGCCATAGGAAGGTACTTGCATAAATACAGGCAAGCTGAAAGGGAGAAAATCAATCACGACAAAAAGTATGAAAACCCTCATATCAACCGTGCTCCACCACCACCACTACTTCTGTCTAGGGTTACTCGTGACAAGGTTGAAAACCCTCCTCCTTCTCCTCCTAATCAATCTGGATGA 426 0.4437 MDQDEQDRALPIANVSRIMKQILPPSAKISKEGKQVMQECVTEFISFVTGEASDKCHKENRKTVNGDDICWALSSLGFDNYAEAIGRYLHKYRQAEREKINHDKKYENPHINRAPPPPLLLSRVTRDKVENPPPSPPNQSG* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1398 141 MobiDBLite consensus disorder prediction 98 141 - -
Gso10g1398 141 SUPERFAMILY Histone-fold 6 112 IPR009072 GO:0046982
Gso10g1398 141 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 9 73 IPR003958 -
Gso10g1398 141 ProSitePatterns NF-YB/HAP3 subunit signature. 40 56 IPR003956 GO:0005634|GO:0006355|GO:0043565
Gso10g1398 141 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-4 1 108 - -
Gso10g1398 141 Gene3D Histone, subunit A 1 115 IPR009072 GO:0046982
Gso10g1398 141 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 108 IPR027113 GO:0001228|GO:0006355|GO:0016602
Gso10g1398 141 PRINTS CCAAT-binding transcription factor subunit A signature 37 55 - -
Gso10g1398 141 PRINTS CCAAT-binding transcription factor subunit A signature 56 74 - -
Gso10g1398 141 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1398 Gso-Chr10 40441468 40444941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1398 5 104 CCAAT-HAP3 Transcription Factor Family AT1G09030 75.000 3.82e-56 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gso10g1398 CBFD_NFYB_HMF 4.8e-25 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1398 K08065 - gmx:100815151 294.664