Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1396 ATGTCAAACATCACAAGTTGTGATAGTGGGAGCTTCTCTACAGAGAATACCAGAGAAGATGCAGCAGTTAAACAACAGCAATCTGAGATGCTTGGTCAGTTCCACAGTCCACATTCTCACACTTCAACTACAACAACAAATAATAGCAATGGTTCCAACACAAATTCACAACCACCTGCACCTGTTAAGAAGAAAAGGAGCCTACCAGGAAATCCAGATCCAAGTGCTGAAGTTATTGCTCTATCACCGACCACACTAATGGCCACAAACAGGTTCATATGTGAAATCTGCAACAAAGGGTTTCAAAGAGACCAGAACCTTCAGTTGCACCGGCGAGGCCACAACTTGCCGTGGAAGCTGAAGCAGAGAACAAGCACGGAAATTCGAAAGAGGGTTTACGTGTGTCCAGAACCTTCGTGCGTCCACCACAACCCAGCAAGAGCACTCGGAGATCTCACTGGCATCAAAAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGTGATAAGTGCTCAAAGAAATACGCTGTTCAATCTGACTGGAAAGCCCACTCAAAAATATGTGGTACAAGGGAATACAAGTGTGACTGTGGTACCATCTTTTCCAGAAGAGACAGCTTCATTACGCACAGAGCTTTCTGTGACGCACTAGCTGAGGAGAACAACAAAGCCAACGAAGGACAATTGCCAAAGATAGGTCCAAACTTGCAATGTCAACAAATCCCAAACCTCGTTTCATCATTACCAATCAACACCAACAGCATTGTTCCCAACCCTGCACAAATGGGTGGCACCACCTCGGAGTTCAACCATGCTGATCACAAGCACCCACTATCACTCCCACACGAGCTCATGCCAATGCCTGCACAAAAACCCTTCAACAACAACATGGCTGCAGGAACAGTGTTCACGAGAAGCCTGTCATCAACCTCTTCTCCCTCTCTTCAACTAAGCTCAAACATGTTCGATGAAAACGGGCTCCACCTTGCTGCAGGGTCGCCACACATGTCAGCCACTGCGTTGTTGCAAAAAGCTGCGCAAATGGGAGCAACACTGACCGAAAAAAGTACTTTTGCAACAAACATGGCACCACCATCGTTTGGTGTGCTGCAACAGCATCATCATCATCAACAACCAAATGGGCAACCCTTCACGAACCAGTACATGCACAGTGGCCACCACCACCAACAACAAGAGGTTAACATTTCTACTCAGTATAGTTTCGGTAGTGCAAATGGGATGGGTGGAGGGAGCGTTGGGATGAACGGTGTGGACATGTTCAACGCTATTTTGGACCAAAGCAAGGCTTTGTCGAAGATCATAGAGCAAAACAACAATAGAAGCAGTAGTGGAGGAACAACAAATGGAGGTTCGAGTAGTGCTATTAATAACGTTGCTGGAAGTAAAGGAAGTGGGGATGTTATGACTCTTGACTTTTTGGGAATAGGAGGTGGAGGAAGTGGTAGTGGTGGGGGTGCACATGGAAATTTCTATGGTGGTGCTCAACAAGGGGAAACTGGTGCACCGGATGAGGTTTGGAGAAACTGGTCTAGTAAGAACGCAGGCTTTGAATCATTTTCAACAACGAGCAGCATTTGA 1605 0.4648 MSNITSCDSGSFSTENTREDAAVKQQQSEMLGQFHSPHSHTSTTTTNNSNGSNTNSQPPAPVKKKRSLPGNPDPSAEVIALSPTTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSTEIRKRVYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNKANEGQLPKIGPNLQCQQIPNLVSSLPINTNSIVPNPAQMGGTTSEFNHADHKHPLSLPHELMPMPAQKPFNNNMAAGTVFTRSLSSTSSPSLQLSSNMFDENGLHLAAGSPHMSATALLQKAAQMGATLTEKSTFATNMAPPSFGVLQQHHHHQQPNGQPFTNQYMHSGHHHQQQEVNISTQYSFGSANGMGGGSVGMNGVDMFNAILDQSKALSKIIEQNNNRSSSGGTTNGGSSSAINNVAGSKGSGDVMTLDFLGIGGGGSGSGGGAHGNFYGGAQQGETGAPDEVWRNWSSKNAGFESFSTTSSI* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1396 534 MobiDBLite consensus disorder prediction 374 400 - -
Gso10g1396 534 Gene3D Classic Zinc Finger 71 137 - -
Gso10g1396 534 SUPERFAMILY beta-beta-alpha zinc fingers 91 188 IPR036236 -
Gso10g1396 534 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 3 487 - -
Gso10g1396 534 MobiDBLite consensus disorder prediction 447 466 - -
Gso10g1396 534 Pfam Zinc-finger double-stranded RNA-binding 92 114 IPR022755 -
Gso10g1396 534 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 114 IPR013087 -
Gso10g1396 534 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 3 487 - -
Gso10g1396 534 Gene3D Classic Zinc Finger 147 226 - -
Gso10g1396 534 MobiDBLite consensus disorder prediction 1 77 - -
Gso10g1396 534 MobiDBLite consensus disorder prediction 496 515 - -
Gso10g1396 534 SMART c2h2final6 92 114 IPR013087 -
Gso10g1396 534 SMART c2h2final6 133 163 IPR013087 -
Gso10g1396 534 SMART c2h2final6 168 188 IPR013087 -
Gso10g1396 534 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Gso10g1396 534 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1396 Gso-Chr10 40374577 40378704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1396 49 352 IDZ Gene Family AT3G50700 55.657 1.98e-116 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso10g1396 zf-C2H2_jaz 7.9e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1396 - - gmx:100813556 993.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1325 19 41960413 41964780 Gso10g1396 10 40374577 40378704 PCT
Gso3g1325 3 39138617 39143265 Gso10g1396 10 40374577 40378704 PCT
Gso19g1977 19 48404144 48408888 Gso10g1396 10 40374577 40378704 PCT
Gso3g2011 3 45559363 45563622 Gso10g1396 10 40374577 40378704 PCT