Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1394 ATGGATAACGCCCGATCAGCGAACGGCGAGGAGAATGCGGCGGGAATCCCGGACGATTTGCGGTGCAAGAGGTCCGACGGGAAGCAGTGGCGGTGCACGGCGATGTCGATGCCGGACAAGACCGTCTGCGAGAAGCACTACATCCAGGCAAAGAAGCGCGCCGCGAATTCCGCTATGAGAGCGAATCTCAAGAAAGCGAAGAGGAAGTCGCAGTCGCTGTCGCTGAACGAGTCCGATAATGTTTATATGGAGAGCAAGAGCGACGATTTCGATGTTCCTCTCTCCTCCATTGGCCTCTCTCAGAAGAAGCTCTCCAAGAACCAGTTCCGCTACGAGCCGGAGCGCGACGCGCCGCGAAGAGGCTCGTCCGCGAGACGCTCTTCGAACCTCAACGACGATGATGATGATGACGATGACGACGACGTGGATGGGGATGCGGATGCTGATGTGGCGCTCTATGAGGAAGAGAATTGGGTCTCCTGTGACTCGCCGCCGGATTCTTCGCGCAAGAGGTCGCGGAGGAGCTTGGAAGCTAATGCTACCACTGAATATTCGGACGGAACCTCCGCCGGTTCTTCCGACGAGGACACCGGCGGGCAGACTTGTCACCAGTGCCGGAGGAATGACCGCGACCGAGTTACTTGGTGTCAACGGTGTGATAGGAGGGGATATTGTGATAGCTGTTTATCAACATGGTACTCGGACATTTCATTGGATGAAATTCAGAGGATATGTCCTGCTTGCCGGGGTATATGTAATTGCAAGACTTGTTTGCGAAGTGATAATTCAATTAAGGTTCGGATACGCGAGATACCTGTTCTAGATAAGTTACAGTATCTCCATGTGCTGCTGTCGTCTGTGCTACCTGTGGTAAAGCAGATCCACTGTGAACAGAGTTTTGAAGTTGAACTTGAAAAGAAGTTGCGTGGTGCTGAAATAGATCTTCCAAGGATAAAATTGAACTCAGATGAGCAGATGTGCTGCAATTTCTGTAGGATACCTATTACTGATTATCATCGACGCTGTCCAAGTTGTTCATATGATTTGTGCCTTAGTTGCTGTCGAGATCTTCGAGAAGCAACTGCAGATCACAATAAAGAACCCCAAACAGAGCAAGCAAAAACTTCTGATCGAAATATATTAAGTAAATTTCCTCATTGGAGATCCAATGACAATGGAAGTATTCCATGTCCCCCTAAGGAGTGTGGTGGCTGTGGTTATTCTTCACTAAATTTAAGCCGGATTTTCAAGATGAACTGGGTTGCAAAGTTGGTGAAAAATGTAGAGGAAATGGTTAGTGGCTGCAGAATTAGTAATGCCGATGGTCCACCGGAAACCGGGCTGAATGATCTGAAACTTTGCCAATATTCTCACAGAGAAGCCAGTGATGATAATTATCTTTATTGCCCAGCATCCGACGATATCAAAACTGATGGGATTGACAATTTTAGAAAGCATTGGAAAACTGGTGAGCCCATTATTGTTAAGCAAGTATTTGATGGGTCATCCATTTCAAGCTGGGATCCAATGGTCATATGGAGAGGGATTCTAGAGACAATAGATGAGAAAGCGAAAGATGAAAACCGGATGGTTAAGGCCATAGATTGCTTAGATGGGTCTGAGATTGATATTGAGCTTGCTCAGTTCATGAAAGGATACTTTGAAGGGCTTATTCTTGAAAATGGTTGGCCACAGTTATTGAAATTGAAAGATTGGCCTTCACCTAGTGCTTCTGAAGAATTTCTGTTGTACCAAAGACCTGAGTTTATCAGCAAACTACCTTTACTTCAGTATATTCACTCCAAGTGGGGCCTTCTCAATGTTGCAGCTAAATTGCCTCATTACTCCTTGCAGAATGATGTAGGACCCAAGATATATATATCTTATGGGATTAGTGATGAACTTGGTAGAGGTGATTCAGTGACAAATCTCCACTTCAATATGCGTGACATGGTGTACCTTTTGGTTCATACAAATGAAGTAAAGCTGAAGGACTGGCAGAGAACTAAAATTGAAATGATGCAAAAAGCTAAAGCTAATAAGGAATTTGAGGCAAAAGAATCACATGGGGATCCTCAAATATCTTCAAGGGGGAGTTCACCTGATTCCTCACTTGGTACAAAAAGTAGTGGACTGGAAATAGACTCAAACCAGAATAAGTCAATTATGGATCAAGGGTTTGAAATTTATTCTAGTGCTGAAGGTAATACGGCCAATTGTAAACTTCCATTCAATCAAAATGGAGACGTCTCTGAGAAAACACATCCTGGAGTTCTTTGGGATGTTTTTCGTCGGCAGGATGTTCCAATATTGACTAAATATTTGAAAATACATTGGAAGGAATTTGGGAAGTCAGATGATCTTGGAAATGAATTTGTTGAATGGCCTCTTTATGATGGAGCTATTTTTCTTGACAAACACCATAAAAGAAAGTTGAAGGAAGAATTTGGAGTGGAGCCTTGGTCATTTGAACAGAATTTGGGGGAAGCTATTTTTGTTCCTGCTGGTTGCCCTTTCCAAGCAAGGAATGTTCAGTCCAATGTTCAGTTAGGCCTTGATTTCTTATCTCCGGAAAGCGTGGGTGATGCTGTAAGATTGGCAGAGGAAATTCGCTGTGTACCTAATGAACATGAAGCAAAGCTTCAAGTTTTGGAGGTTGGGAAGATCTCCCTTTATGCAGCAAGTTCAGCCATCAAAGAAGTTCAAAAACTTGTACTTGACCCAAAACTTGGCGCCCAGATCGGTTATGGAGATCCTAATTTGACTGCAATGGTTTCCGAGAATTATGAGAAGATGGTTAAGCGGAGGCAGATTACTTGTGCTTGA 2826 0.443 MDNARSANGEENAAGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKKRAANSAMRANLKKAKRKSQSLSLNESDNVYMESKSDDFDVPLSSIGLSQKKLSKNQFRYEPERDAPRRGSSARRSSNLNDDDDDDDDDDVDGDADADVALYEEENWVSCDSPPDSSRKRSRRSLEANATTEYSDGTSAGSSDEDTGGQTCHQCRRNDRDRVTWCQRCDRRGYCDSCLSTWYSDISLDEIQRICPACRGICNCKTCLRSDNSIKVRIREIPVLDKLQYLHVLLSSVLPVVKQIHCEQSFEVELEKKLRGAEIDLPRIKLNSDEQMCCNFCRIPITDYHRRCPSCSYDLCLSCCRDLREATADHNKEPQTEQAKTSDRNILSKFPHWRSNDNGSIPCPPKECGGCGYSSLNLSRIFKMNWVAKLVKNVEEMVSGCRISNADGPPETGLNDLKLCQYSHREASDDNYLYCPASDDIKTDGIDNFRKHWKTGEPIIVKQVFDGSSISSWDPMVIWRGILETIDEKAKDENRMVKAIDCLDGSEIDIELAQFMKGYFEGLILENGWPQLLKLKDWPSPSASEEFLLYQRPEFISKLPLLQYIHSKWGLLNVAAKLPHYSLQNDVGPKIYISYGISDELGRGDSVTNLHFNMRDMVYLLVHTNEVKLKDWQRTKIEMMQKAKANKEFEAKESHGDPQISSRGSSPDSSLGTKSSGLEIDSNQNKSIMDQGFEIYSSAEGNTANCKLPFNQNGDVSEKTHPGVLWDVFRRQDVPILTKYLKIHWKEFGKSDDLGNEFVEWPLYDGAIFLDKHHKRKLKEEFGVEPWSFEQNLGEAIFVPAGCPFQARNVQSNVQLGLDFLSPESVGDAVRLAEEIRCVPNEHEAKLQVLEVGKISLYAASSAIKEVQKLVLDPKLGAQIGYGDPNLTAMVSENYEKMVKRRQITCA* 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1394 941 ProSiteProfiles WRC domain profile. 16 60 IPR014977 -
Gso10g1394 941 MobiDBLite consensus disorder prediction 1 20 - -
Gso10g1394 941 Pfam WRC 17 57 IPR014977 -
Gso10g1394 941 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 197 262 IPR018866 -
Gso10g1394 941 Coils Coil 56 76 - -
Gso10g1394 941 MobiDBLite consensus disorder prediction 677 691 - -
Gso10g1394 941 Pfam JmjC domain, hydroxylase 805 850 IPR003347 -
Gso10g1394 941 ProSiteProfiles JmjC domain profile. 575 871 IPR003347 -
Gso10g1394 941 ProSiteProfiles Zinc finger RING-type profile. 202 249 IPR001841 -
Gso10g1394 941 MobiDBLite consensus disorder prediction 58 78 - -
Gso10g1394 941 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 8 930 IPR045109 GO:0032454|GO:0033169
Gso10g1394 941 SMART cupin_9 582 871 IPR003347 -
Gso10g1394 941 SUPERFAMILY Clavaminate synthase-like 481 871 - -
Gso10g1394 941 MobiDBLite consensus disorder prediction 692 717 - -
Gso10g1394 941 Gene3D Cupin 462 880 - -
Gso10g1394 941 MobiDBLite consensus disorder prediction 158 201 - -
Gso10g1394 941 MobiDBLite consensus disorder prediction 178 199 - -
Gso10g1394 941 PANTHER JMJC DOMAIN PROTEIN JMJ24 8 930 - -
Gso10g1394 941 MobiDBLite consensus disorder prediction 105 145 - -
Gso10g1394 941 MobiDBLite consensus disorder prediction 107 131 - -
Gso10g1394 941 MobiDBLite consensus disorder prediction 677 717 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1394 Gso-Chr10 40362114 40370962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1394 17 57 GRF Transcription Factor Family AT3G13960 46.341 2.74e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gso10g1394 JmjC 1.7e-06 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1394 K15601 - gmx:100801287 1867.82