Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1393 ATGGCGGAAACGCACGAAGACACCCCGAAAGAAACCGTTCACAAAGAAGAAGAAGAAGAGGACCAAAGCTTCGAAGAGCTCGGCGTGGACGCTCGTCTCCTTCGCGCCCTAATCAAGAAAAGAATCGAGAAACCTACTCCAATTCAGCGCGTCGCGATTCCACTCATTCTGGAAGGTAAGGACGTGGTTGCACGCGCCAAAACAGGTTCGGGAAAGACACTCGCGTACCTTCTCCCGTTGCTTCAGAAACTGTTTACTGCTAACTCTGATCGGAAGAAACTCGCGCCAAATGCTTTTGTTCTTGTTCCTACTCGCGAACTAAGTCAACAGGTATATGCGGAAGTGAAGTCTCTGGTTGAATTATGCAGAGTTCAGCTGAAAGTTGTGCAGTTGAATAGTAACATGCTTGCTAATGACTTGCGGGCAGCATTGGCTGGACCTCCTGATATTTTGATCTCCACTCCTGCTTGTGTTGCGAAGTGTTTGTCCTGTGGCGTACTTCAGGCGGCATCCATTAATGCATCGCTTGAAACTCTTGTTCTTGATGAGGCAGATCTTCTATTATCATATGGGTATGAAAATGATATTAAAGCTTTAACACCTCACGTACCCAGAAGTTGCCAGTGTCTTCTTATGTCTGCAACATCAAGTGCTGATGTGGACAAACTAAAGAAGTTGATTCTGCACAACCCCTTTATTTTGACTTTGCCTGAAGTGGGAAATCATAAGGATGAGGTCATTCCTAAAAATGTTCAGCAATTCTGGATCTCATGTCCTGCCAGTGATAAGTTACTTTACATCCTTGCTGTGTTGAAATTGGGGTTGGTCCAAAAGAAAGTTCTGATATTCACAAATACCATAGACATGAGTTTCAGGTTGAAACTTTTCTTGGAAAAGTTTGGAATCAGATCTGCTGTTTTAAATCCCGAGTTGCCTCAGAATTCTCGTCTCCATATTCTTGAGGAATTCAATGCGGGCCTGTTTGATTATCTAATTGCAACAGATCTTAGCCAGTCAAAGGAAAAGGATGAAGTGCCTAAGGAAAGTATTGTTGGATCACGGAAGTCTAGAAAACATGCTAAAATAAAATTAGATTCTGAATTTGGAGTTGTAAGGGGAATTGACTTTAAAAATGTATACACGGTTATAAACTTTGAAATGCCTCAGAGTGTTGCAGGATATGTACATCGAATTGGACGTACAGGAAGAGCATACAATTCTGGTGCTTCTGTCTCTCTGGTTTCCACGGATGAAATGGATACTTTAGAAGAAATAAGATCTTTTGTTGGGGATGATGAAAACAAAGGCACAAATTCCATTGCTGAGTTTCCCCTCCTCACCAAGAATGCAGTTGAATCTTTACGGTACAGGGCTGAGGATGTTGCAAAGAGTGTGACTAGAATTGCTGTCCGAGAGTCACGAGCCCAGGATCTGAGGAATGAAATTTTGAACTCTGAAAAGTTGAAAGCCCACTTCGAAACTAATCCAAAAGACCTAGATCTACTGAAGCATGACAAAATTTTGAGCAAGAATGCCCCACCTCCTCACCTACGGGATGTGCCTGAGTACCTATTAGACAAACCAACGAAAGAGGCAAGGGAAATGGTCAAGCTTGCAAGGGATGCAATGGGAAATAATAATCGCCGCAAGGGATCCAAGAGAAAATTAAGAAAAGAAGGAGACCCTCTGAAGGCTATCTATGCTACGGCGTCATCAAAAAGACCGCACAAAGCTAGGAAGACTGGTGGAAGCGATAGCCTAAATAGCAGTGATAGGCATAAACACAAAAAGAATAAGGGTATTTGA 1806 0.428 MAETHEDTPKETVHKEEEEEDQSFEELGVDARLLRALIKKRIEKPTPIQRVAIPLILEGKDVVARAKTGSGKTLAYLLPLLQKLFTANSDRKKLAPNAFVLVPTRELSQQVYAEVKSLVELCRVQLKVVQLNSNMLANDLRAALAGPPDILISTPACVAKCLSCGVLQAASINASLETLVLDEADLLLSYGYENDIKALTPHVPRSCQCLLMSATSSADVDKLKKLILHNPFILTLPEVGNHKDEVIPKNVQQFWISCPASDKLLYILAVLKLGLVQKKVLIFTNTIDMSFRLKLFLEKFGIRSAVLNPELPQNSRLHILEEFNAGLFDYLIATDLSQSKEKDEVPKESIVGSRKSRKHAKIKLDSEFGVVRGIDFKNVYTVINFEMPQSVAGYVHRIGRTGRAYNSGASVSLVSTDEMDTLEEIRSFVGDDENKGTNSIAEFPLLTKNAVESLRYRAEDVAKSVTRIAVRESRAQDLRNEILNSEKLKAHFETNPKDLDLLKHDKILSKNAPPPHLRDVPEYLLDKPTKEAREMVKLARDAMGNNNRRKGSKRKLRKEGDPLKAIYATASSKRPHKARKTGGSDSLNSSDRHKHKKNKGI* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1393 601 PANTHER ATP-DEPENDENT RNA HELICASE DDX56-RELATED 11 540 - -
Gso10g1393 601 SMART helicmild6 291 405 IPR001650 -
Gso10g1393 601 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 235 IPR027417 -
Gso10g1393 601 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 269 451 IPR001650 -
Gso10g1393 601 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 53 234 IPR014001 -
Gso10g1393 601 CDD DEADc_DDX56 29 236 - -
Gso10g1393 601 Pfam Helicase conserved C-terminal domain 262 405 IPR001650 -
Gso10g1393 601 Gene3D - 238 444 IPR027417 -
Gso10g1393 601 SMART ultradead3 41 254 IPR014001 -
Gso10g1393 601 MobiDBLite consensus disorder prediction 1 24 - -
Gso10g1393 601 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 22 50 IPR014014 GO:0003724
Gso10g1393 601 MobiDBLite consensus disorder prediction 539 601 - -
Gso10g1393 601 MobiDBLite consensus disorder prediction 578 592 - -
Gso10g1393 601 PANTHER RNA HELICASE 11 540 - -
Gso10g1393 601 CDD SF2_C_DEAD 251 414 - -
Gso10g1393 601 Pfam DEAD/DEAH box helicase 46 223 IPR011545 GO:0003676|GO:0005524
Gso10g1393 601 MobiDBLite consensus disorder prediction 1 17 - -
Gso10g1393 601 Coils Coil 475 495 - -
Gso10g1393 601 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 246 430 IPR027417 -
Gso10g1393 601 Gene3D - 1 236 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1393 Gso-Chr10 40351362 40358665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1393 23 445 Eukaryotic Initiation Factors Gene Family AT3G19760 25.236 2.20e-37 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1393 K14810 - gmx:100800749 1134.4