LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso10g1390	ATGGGGTGTGGTGGTTCTGAGCATGTTACCATGATCTTTATCATCACCATCTTGATCCTCCTATCATCACAAAGCACCAACATTTTGACTGTGGCTGGTTCTGTATTCAATGCAGTTGGAAACTTCCAGGTTCATGGCCTACCAGAGATGTATTTCATTGAAGAGAATGATGAAAAGCTGGTTAAGAAAATCTCAGGAATAGATGAGAATGAAAAGAAGCAAGCCTTAATAGTGGAGAAGTTTAGATCCTTGCTTGGACTCAAGAGTTTCCACACCAAAGTACCATTCAACGGTGATTTGGAGTTTCTCTCTCCCTCACCTTCTCCATCACCTATCATTGAAGAAACTCAGGCTCCAGCTCCTTCTCCTTCTCCTCTTCCACACGTGCACCATCATTCACACCATCCACCACATCATAAGAATCCATCACTTCACCAAACTCATCATGAAGATAGAGGCAGGGCTAAGAGAATACTAATAGCTGTTCTTGTATCTGCTGGAGTTGCTATATTGATTGGTGCTTGTGGGCTATTCTTGGTGTGGAGGAAATTCTCAAATCATACAAAGAAAACCAAAAGGACAATGCCACTATATAATAGCAAGAGCAAAGGAAGTGGAGGTGTTTATCAAAGTTCATCAAGCAAGGTAAGTTTAAACTCTGAACTAGATCTGTTTTATCTTAATGCTTTAGGTGAGGACATAGAGCAACACTCTTGCAGCTTCAAAAAGACTCGCGAGGATGGTTTAGAATATGATATTGTTAGCGGTTCTTCCACGAAGGATATTGCATCTGTTCATGAAGATGAGGAAGCAGTTAAAGGTGAAGGTGAAGGTGAAGGTGAATCTGATGGCGGCAACTCTTCTTCTGGGGATAAAATTATCCCTAAAGATTGTCATTCATCAGACAATGAAAGTTTTCATTCCTTTGTTAATGATTCACACTCAAATAGTAATAGACTCTCCAATGCTTCCGCTTGTAGTCTTAGTGACACAAACTCTCTGTCCCGTCAAAATTCAAGTTCATTACCAAACCCACAATTTCCTAGTTCTCAACATAACTTAATGTCAAATATACAACCTCACCAATCACCAAATAGTGCAAAACATGATCAAGAGAAAGAGATTGAAACCTCTCTCCAATGTCCAAAGACATTCACTTCCCCTCCACCTCCTCCACCACCACCACCACCTCCACCATTGCGAATGCCATTATTTTCTTTGCATTCTCTCACTTCTTCATCTAGACTCTCCTCTCACTCCCCACTTTCCTTGACATCTAATAATTTATCATCCCTGGTAAATTCAGACACTTCCTCGTGTTCAAATCAAAGTCCAGAAAAGGAGTTGCCTTCTCCAAATAGACCTTACCCTACACAATCTCCTCCCAACATTCCCCCACCACCATGTCCACCTCCATTTCTTAAGGGCAATAGTGTCAAAACCCCACCTCCTCCACCTTCTCAACTCCCTCAATTTACCCCTCTTGGTAAAGATGGTGCACCATTGCCAAAACTCAAACCACTTCACTGGGACAAAGTCAGAGCTGCACCAAATCGCACAATGGTTTGGGACAAGCTACGGTCAAGTTCATTCGAGTTGGACGAGGAAATGATCGAGTCTCTATTTGGTTACAATTTGCAAAATTCAATTAAGAATGACGAAGCAAAGAGTAAAACCCCGTCTCCAGGCAAGCATGTACTTGAGCCAAAACGCCTGCAGAACATAACTATACTCTCCAAAGCTCTGAATGCAACAGCTGAGCATGTCTGCGAGGCCTTAATGCAAGGGAAGGGGTTGTCTTTGCCCCAACTAGAGGCACTAGTGAAAATGGTACCCACCAAGGAGGAAGAGTCCAAGCTCTTCAATTATAAAGGTGACATCAATGAATTGGGGTCCGCCGAAAGGTTCGTGAGGGCAATGCTCGATGTGCCATTTGCCTTTCAAAGAGTAGAAGGCATGCTTTTCAGAGAAACATTTGACGATGAAGTAGTTCACCTCAGGAACTCATTTTCAATGCTTGAGGAAGCATGCAAGGAACTAAGATCAAGCAGGCTCTTCTTGAAGTTACTAGAAGCAGTGCTCAAAACGGGAAACCGAATGAACGTTGGAACAACCAGAGGAGGTGCTAGAGCATTTAAACTCGATGCACTTCTCAAGCTTGCAGATGTTAAGGGAACTGATGGGAAAACCACGTTGCTCCATTTCGTTGTTCAGGAGATTGTTCGTTCTGAAGGAATAAGAGTTTCAGACAGCATTATGGGGAAAATCAGCCAAAGAAGTAAGAACAGAACGGAGGAAGAGAAGGAAGAAGATTACAAAAGGATGGGACTAGAACTTGTTTCTGGTCTCAGCACTGAGTTATACAACGTGAAAAAAACAGCTACCATTGACTTGGACGTTCTTGCAAGCTCTGTGTCAAACCTATCAGAAGGAATGAACAAGCTGCAACATCTAGTGGATAAGGAGTTGCATAAGGACGAGAGAAGCATGAACTTTGTGCAGTGTATGAAGTCATTCCTTAACTATGCTGATGGAAACTTGAAGGAGTTGCGTGGAGATGAAGATATAGTGTTGGCACGCGTGAAAGAAATTACGGAGTATTTTCATGGGGATGTGATCAGCAAAGAAGATGCAAACCCACTTAGGATATTTGTGATTGTGAGAGATTTTCTGGGGAGTTTAGATAATGTGTGTAAAGAACTTAGAAGGTCTAAAGCTCCACGTAGCCTGAACCCTCTTGCTATTCTCCCTTTAGATAGATCCTAG	2766	0.4241	MGCGGSEHVTMIFIITILILLSSQSTNILTVAGSVFNAVGNFQVHGLPEMYFIEENDEKLVKKISGIDENEKKQALIVEKFRSLLGLKSFHTKVPFNGDLEFLSPSPSPSPIIEETQAPAPSPSPLPHVHHHSHHPPHHKNPSLHQTHHEDRGRAKRILIAVLVSAGVAILIGACGLFLVWRKFSNHTKKTKRTMPLYNSKSKGSGGVYQSSSSKVSLNSELDLFYLNALGEDIEQHSCSFKKTREDGLEYDIVSGSSTKDIASVHEDEEAVKGEGEGEGESDGGNSSSGDKIIPKDCHSSDNESFHSFVNDSHSNSNRLSNASACSLSDTNSLSRQNSSSLPNPQFPSSQHNLMSNIQPHQSPNSAKHDQEKEIETSLQCPKTFTSPPPPPPPPPPPPLRMPLFSLHSLTSSSRLSSHSPLSLTSNNLSSLVNSDTSSCSNQSPEKELPSPNRPYPTQSPPNIPPPPCPPPFLKGNSVKTPPPPPSQLPQFTPLGKDGAPLPKLKPLHWDKVRAAPNRTMVWDKLRSSSFELDEEMIESLFGYNLQNSIKNDEAKSKTPSPGKHVLEPKRLQNITILSKALNATAEHVCEALMQGKGLSLPQLEALVKMVPTKEEESKLFNYKGDINELGSAERFVRAMLDVPFAFQRVEGMLFRETFDDEVVHLRNSFSMLEEACKELRSSRLFLKLLEAVLKTGNRMNVGTTRGGARAFKLDALLKLADVKGTDGKTTLLHFVVQEIVRSEGIRVSDSIMGKISQRSKNRTEEEKEEDYKRMGLELVSGLSTELYNVKKTATIDLDVLASSVSNLSEGMNKLQHLVDKELHKDERSMNFVQCMKSFLNYADGNLKELRGDEDIVLARVKEITEYFHGDVISKEDANPLRIFVIVRDFLGSLDNVCKELRRSKAPRSLNPLAILPLDRS*	922

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso10g1390	921	SUPERFAMILY	Formin homology 2 domain (FH2 domain)	508	905	-	-
	Gso10g1390	921	Gene3D	Formin, FH2 domain	518	910	IPR042201	-
	Gso10g1390	921	MobiDBLite	consensus disorder prediction	111	151	-	-
	Gso10g1390	921	MobiDBLite	consensus disorder prediction	128	142	-	-
	Gso10g1390	921	MobiDBLite	consensus disorder prediction	112	126	-	-
	Gso10g1390	921	MobiDBLite	consensus disorder prediction	450	491	-	-
	Gso10g1390	921	MobiDBLite	consensus disorder prediction	260	405	-	-
	Gso10g1390	921	MobiDBLite	consensus disorder prediction	430	449	-	-
	Gso10g1390	921	MobiDBLite	consensus disorder prediction	262	280	-	-
	Gso10g1390	921	MobiDBLite	consensus disorder prediction	430	506	-	-
	Gso10g1390	921	PANTHER	FORMIN-RELATED	56	317	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Gso10g1390	921	PANTHER	FORMIN-RELATED	389	914	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Gso10g1390	921	MobiDBLite	consensus disorder prediction	304	365	-	-
	Gso10g1390	921	SMART	it6_source	495	909	IPR015425	-
	Gso10g1390	921	PANTHER	FORMIN-LIKE PROTEIN	389	914	-	-
	Gso10g1390	921	PANTHER	FORMIN-LIKE PROTEIN	56	317	-	-
	Gso10g1390	921	MobiDBLite	consensus disorder prediction	384	403	-	-
	Gso10g1390	921	Pfam	Formin Homology 2 Domain	499	894	IPR015425	-
	Gso10g1390	921	ProSiteProfiles	Formin homology-2 (FH2) domain profile.	495	920	IPR015425	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso10g1390	Gso-Chr10	40315127	40319853	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso10g1390	480	914	FH2 protein (formin) Gene Family	AT3G05470	74.658	0.0	651

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso10g1390	-		-	gmx:100811929	1564.28

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso19g1972	19	48365130	48368729	Gso10g1390	10	40315127	40319853	PCT
	Gso3g2009	3	45539329	45542866	Gso10g1390	10	40315127	40319853	PCT