Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1378 ATGGGGGAAGATGGACAAAGTAAGAGGAGAATCGCCATCATTGGGGTCTCTACCATCTTTCTAGTGGCTATGGTCGTGGCGGTCGCAGTTGGTGTCAATTACTTCAATTTGAACGGTGGTTCCAACGATGATGCACACGATGACAAGTCCCAAATTGCTTCCTCTGTGAAAGCGGTGAAAACCCTTTGCAAACCCACGGATTACCAGAAAGAATGCGAGAAAAGCTTGCGTGCAGAAGCTGGAAACACCACGGACCCAAGAGAACTCATCAAAATTGCCTTCAAAATAACCATTAAGAAAATGGGAAACGGGCTCAAGAAAACGGATTTCATGCACGAGGTTGAGAATGACCCTAGATCCAAGATGGCACTCGAAACATGCAAGCAACTCATGAATCTTTCCATTGATGAATTCAAGAGGTCGCTTGAGAGAATGGGAAAGTTTGATCTCAACAACCTCGACAACATCCTCAATAGTTTAAGGGTGTGGCTTAGCGGTGCAATCACGTACCAAGAGACATGCTTGGATGGCTTCAAGAACACCACCAACAAAGCAGGGAATAAGATGAAGAACTTGTTAAAGAGTACCATGCACATGAGTAGCAATGCCCTTGCAATCATATCAGAACTTGCAGACACTGTTGTGAAAGTGAATGTGACGACCAAAGATATTGGGCATCGCCAGCTTGTTGAGGATTCTGGGGACGAACATGTTTTTGGTCAACACAAGGTTATACCCTCGTGGGTTGAGGATGAGGAGGATGGTGTTGGTGTTGGTGTTCGTAGGTTACTTCATGAAAGTGCTTACAAAATCAAGCCTAATGTGGTTGTGGCCAAAGATGGTAGTGGAAAGTACAAGAGCATCAACCAGGCATTGAAGAAGGTGCCTGAGAAGAACCAAAAGCCATTCGTGATTTACATTAAAGAGGGTGTTTACCATGAGTATGTTGAAGTTGCTAAGAAAATGACCCATGTGGTGTTTGTGGGTGATGGTAGCAAAAAGACACGAATCACCGGCAACAAAAACTTCGTAGATGGACTTAATACTTACAGAACTGCCTCTGTTGCTGTTGAAGGAGATTATTTTGTAGCCGTGAATATAGGGTTTGAGAACTCTGCTGGCCCCGAAAAGCATCAAGCAGTAGCCATAAGGGTCCAAGCAGACAAATCCATTTTCTATAAATGCTCAATGGATGGGTACCAAGACACACTGTATGCTCATGCCATGCGTCAATTCTATCGTGATTGCACAATTTCAGGCACCGTAGACTTCGTCTTTGGTGATGCAGTGGCTGTTTTCCAGAACTGCACTTTCGTGGTCAGAAAAGCATTAGAAAACCAGCAATGCATTGTGACAGCACAAGGCAGAAAAGAGAGACACCAACCATCAGGAACAGTGATCCAAGGGAGCTCCATTGTGTCAAATCACACAGAGAATCTTGATAACAAGGCTTACCTAGCGCGTCCATGGAAGAATCACTCAAGGACCATCTTCATGAACACTTACATTGAGGCTTTGATTCAACCAGAAGGGTATATGCCATGGCAAGGACAAAATGGTCTTTCGGGTATGGATAATTGTTTCTATGCCGAGTACAATAACACTGGTCCTGGCTCAAATAAATCCAAGCGTGTAAAATGGCGAGGGATCATTACCCTCACTTCAGAATCCGTAAGCCGTTACTCTCCATACAAATTTTTTCATGGAGATGATTGGATCAAAGTTACTAGGATTCCTTACTATTCTGCTGTCACGGCCCCAAAACACTAA 1770 0.4407 MGEDGQSKRRIAIIGVSTIFLVAMVVAVAVGVNYFNLNGGSNDDAHDDKSQIASSVKAVKTLCKPTDYQKECEKSLRAEAGNTTDPRELIKIAFKITIKKMGNGLKKTDFMHEVENDPRSKMALETCKQLMNLSIDEFKRSLERMGKFDLNNLDNILNSLRVWLSGAITYQETCLDGFKNTTNKAGNKMKNLLKSTMHMSSNALAIISELADTVVKVNVTTKDIGHRQLVEDSGDEHVFGQHKVIPSWVEDEEDGVGVGVRRLLHESAYKIKPNVVVAKDGSGKYKSINQALKKVPEKNQKPFVIYIKEGVYHEYVEVAKKMTHVVFVGDGSKKTRITGNKNFVDGLNTYRTASVAVEGDYFVAVNIGFENSAGPEKHQAVAIRVQADKSIFYKCSMDGYQDTLYAHAMRQFYRDCTISGTVDFVFGDAVAVFQNCTFVVRKALENQQCIVTAQGRKERHQPSGTVIQGSSIVSNHTENLDNKAYLARPWKNHSRTIFMNTYIEALIQPEGYMPWQGQNGLSGMDNCFYAEYNNTGPGSNKSKRVKWRGIITLTSESVSRYSPYKFFHGDDWIKVTRIPYYSAVTAPKH* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1378 589 CDD PMEI-like_3 61 211 - -
Gso10g1378 589 SMART PMEI_2 54 206 IPR006501 GO:0004857
Gso10g1378 589 Gene3D Invertase/pectin methylesterase inhibitor family protein 54 211 IPR035513 -
Gso10g1378 589 SUPERFAMILY Pectin lyase-like 271 581 IPR011050 -
Gso10g1378 589 Pfam Pectinesterase 274 570 IPR000070 GO:0030599|GO:0042545
Gso10g1378 589 PANTHER PECTINESTERASE 10 586 - -
Gso10g1378 589 PANTHER PECTINESTERASE 10 586 - -
Gso10g1378 589 Pfam Plant invertase/pectin methylesterase inhibitor 58 206 IPR006501 GO:0004857
Gso10g1378 589 Gene3D - 271 586 IPR012334 -
Gso10g1378 589 ProSitePatterns Pectinesterase signature 2. 418 427 IPR033131 -
Gso10g1378 589 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 58 210 IPR035513 -
Gso10g1378 589 TIGRFAM PME_inhib: pectinesterase inhibitor domain 55 210 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1378 Gso-Chr10 40194034 40196920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1378 3 586 Carbohydrate Esterase AT3G05610 47.959 0.0 590
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1378 K01051 - gmx:100810853 1149.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1950 19 48195724 48198542 Gso10g1378 10 40194034 40196920 PCT
Gso3g1988 3 45380377 45382782 Gso10g1378 10 40194034 40196920 PCT