Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1377 ATGGCCACAAACATGAAAATATGCACTACCTTGTACACCCTTGTTTTCCTCTTCACCCTCTGTCTTTTTTCATCACATGCAGCTTTCTCCTCCACTCCAAATGGCTCATGCGACACCACACCCTACCCAGCATTCTGCAAAACTACTCTGCCAGCTTCTCAATATTTATCCATACAAGACCAATGCCGTTTCTTCCCTCAGCAATCCTTATCAATCACAAAAACCATTTTCAATTTGGTCTCTTCTTATCTCAGAGACCCCTACACCATTCCTCATTCAACAGTGCACGCCCTTGAAGATTGTCTTAATCTTTCAGAACTTAACTCTGATTTCTTGTCCAATGTCCTCCAAGCCATTGAAAACACCCTGGCTAGCTATGAGGTCTATGACTTACAAACCTTGCTTAGTGCAATTTTAACTAACCAACAAACGTGCTTGGATGGTTTTAAAGAGGTAACACCCTATCCTATAGTTACCAATGCCTTATCAAGTCCTCTTTCTGATGCAATCAAACTATATAGCACATCTTTAGCCCTTTTCACCCGTGGTTGGGTTAGTGCAGCCACCACCACCACAGGAAGTTCAACCACGGTTGAGACTATTATTAATAGAAAGTTGCTGCAAACAAGCGTTGACGACAATGTGGTGGTGAACCCAGATGGGTCTGGGGATTTCGCCACCATAAATGATGCAATACATGCTGCACCTAACAATACCGGTACCAACAACGGGTACCATGTAATTTATGTTGTCGCTGGGATTTACAATGAGTACGTGTCTGTTCCTAAGAGCAAGCAGAACCTAATGCTCGTTGGAGATGGCATCAACCGCACTGTGCTCACTGGCAATCGCAGCGTGGTCGATGGCTGGACCACTTTCCAATCTGCCACTTTCGCTGTAGTTGGAAAAGGGTTTGTTGCAGTGAACATAACATTTCGCAACACTGCGGGATCCAGCAAGCATCAAGCAGTGGCTGTGAGAAACGGGGCAGACATGTCCACGTTCTACAATTGTAGTTTTGAAGGTTACCAAGATACACTGTATGTACATTCCCTAAGGCAATTCTACAAAAGCTGTGACATTTATGGAACAGTGGACTTCATATTTGGCAACGCAGCAGCACTACTCCAGGATTGTAACATGTATCCAAGACTTCCTATGCAAAACCAGTTCAATGCAATCACAGCACAAGGCAGAACAGATCCAAACCAAAACACTGGCATCTCCATACAAAACTGTTGCATAATAGCAGCCAGTGACTTGGGTGATGCTACCAACAATTATAATGGGATAAAGACATATTTGGGTCGGCCTTGGAAGGAGTATTCGAGGACTGTTTACATGCAATCTTTCATTGATGGCCTAATTGATCCAAAGGGGTGGAACGAATGGTCAGGGGATTTTGCTTTGAGCACGCTGTATTATGCAGAGTTTGCTAACTGGGGACCTGGTTCTAACACTAGCAATAGGGTCACATGGGAAGGTTACCATCTCATTGATGAAAAGGATGCAGATGATTTCACGGTGCACAAGTTTATTCAAGGTGAGAAATGGCTGCCTCAGACAGGAGTGCCTTTCAAAGCTGGGTTACAGTGA 1596 0.4417 MATNMKICTTLYTLVFLFTLCLFSSHAAFSSTPNGSCDTTPYPAFCKTTLPASQYLSIQDQCRFFPQQSLSITKTIFNLVSSYLRDPYTIPHSTVHALEDCLNLSELNSDFLSNVLQAIENTLASYEVYDLQTLLSAILTNQQTCLDGFKEVTPYPIVTNALSSPLSDAIKLYSTSLALFTRGWVSAATTTTGSSTTVETIINRKLLQTSVDDNVVVNPDGSGDFATINDAIHAAPNNTGTNNGYHVIYVVAGIYNEYVSVPKSKQNLMLVGDGINRTVLTGNRSVVDGWTTFQSATFAVVGKGFVAVNITFRNTAGSSKHQAVAVRNGADMSTFYNCSFEGYQDTLYVHSLRQFYKSCDIYGTVDFIFGNAAALLQDCNMYPRLPMQNQFNAITAQGRTDPNQNTGISIQNCCIIAASDLGDATNNYNGIKTYLGRPWKEYSRTVYMQSFIDGLIDPKGWNEWSGDFALSTLYYAEFANWGPGSNTSNRVTWEGYHLIDEKDADDFTVHKFIQGEKWLPQTGVPFKAGLQ* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1377 531 ProSitePatterns Pectinesterase signature 2. 361 370 IPR033131 -
Gso10g1377 531 CDD PMEI-like_3 36 184 - -
Gso10g1377 531 Gene3D - 208 530 IPR012334 -
Gso10g1377 531 Pfam Pectinesterase 214 516 IPR000070 GO:0030599|GO:0042545
Gso10g1377 531 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 182 IPR035513 -
Gso10g1377 531 SUPERFAMILY Pectin lyase-like 212 529 IPR011050 -
Gso10g1377 531 Pfam Plant invertase/pectin methylesterase inhibitor 35 179 IPR006501 GO:0004857
Gso10g1377 531 PANTHER PECTINESTERASE 17 529 - -
Gso10g1377 531 Gene3D Invertase/pectin methylesterase inhibitor family protein 33 182 IPR035513 -
Gso10g1377 531 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 17-RELATED 17 529 - -
Gso10g1377 531 SMART PMEI_2 28 179 IPR006501 GO:0004857
Gso10g1377 531 TIGRFAM PME_inhib: pectinesterase inhibitor domain 14 179 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1377 Gso-Chr10 40190149 40192749 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1377 14 530 Carbohydrate Esterase AT4G02330 50.265 0.0 547
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1377 K01051 - gmx:100810329 1065.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1949 19 48191788 48194514 Gso10g1377 10 40190149 40192749 PCT