Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1365 ATGGTTAGGGGAGGAAGGTTTAGCGGCAAACGCAATTTCAGGAAAAGGGTTCGGTCAAAGGAGGGAGGTTCTGATGATTCGGATGAGGACTATGTGGTTTCAGATGAAGGTAGAGAGGCATCTGACTATTACTGCTCCTCCTTAGATGGATGCGCATCAGAGGAGGGTTTTGATAGTTTTATGGAAGAAGAGGAGGAGCAATTTCGAAGAGTGAGGAGTATCAATAGATCCAAGTCAAAAAAGGGCATTGCTGGTCGGCGGAAAAATGGCAGTAAAAGCTCACACAGGAGGGGAAGGATTACATATGCAGAAGAAGAAGACGTAGAAGAGGAGGAGGAGGAGGAGGAAGAGTTTGAAGACGAAGAGGAAGAGGACGAGGACGAGGAAGAATACAAAGAGGAGGAGGAGGAGGAGGAAAGTCAAGAAGCGAGGAATTTCAAAAGGTCAAAGGCCAAAAATGGTGTTTGTGGTAAGAAAAAACGTGCAGGTAAAATCTCCCCAAAGAGGGGAAGGAAAATACGTGCAGAACAATTGGAAGAAGAGGAGGAGGAGGAAGAAGAGGAGAAACAGGTGGAGGAAGAGGAGGAGGAGAAGGTGGAGAGAAGTGGAGCTGAGGAAGAAGAACCGGAGGGAGATAGAGATGGAGAGGATGAAGATTTTGAATATGATGATGAGGATGATGAATTTTTGCCAGAGGAAGAAGAATATTCAGATGAGGAAGAAATGGGGGGGAGAAACAAGAAAAACGAGGGCGTGAAAATGGAGAAGAAGGTTTTGCAGAAGAAAAGGGCCTCTGTGGTTTCTACCAGGGGTCGGAAAAGGCGGAGTTCTAGAGCATCAAAGAAACCCTTGGGAAACAAAAGAAGAAAGAATGGGAGGTTAAGGAAGAAAGAAAAGTGTGAAGATGAGGATAATTTTATGGATAATGGCACAACCATCGGGACAACGACTGGGAGAAAGCGGGGCCAGAAGAGAAGAAGGGTGCTTCTTTCAGATTCAGATTATGCATCTTCTGGATCATCTGATTTTGAGTTTACCATATCTGAAGAAGAGAGAGAACAGGTGAGAGAAGCCAAGAGATTGTGTGGAAATTTGAGAAATAACTTGAGGAGTTCATCCCATCCAATAAATAAAGAGGCTGGTGTCCATGAGGATCAACATCGACAGCGCAAGCCTCCAGCTCGGAAGGGTAAGGAAAAGATAGAAGAACCTCAGGGAAGAAAGGGTAAGGAAAAGGTGGAGGATTTAAAAAGTGAGAAGGGAAAGCAAACATGTGGAATTTGTCTATCTGAAGAAGATAAAAGAAGAGTAAGGGGAGTACTAAATTGTTGCACTCACTTCTTTTGTTTTGCTTGCATTATGGAGTGGGCAAAGGTGGAATCTCGCTGCCCTTTGTGTAAACAGAGATTCAAAACAATCAGCAAGCCTGCACGGTCAACGACAGGGATTGATTTAAGAGAAGTGGTGATACAAGTTCCAGAACGTGACCAGGTTTATCAGCCCTCTGAAGAAGAACTAAGGAGCTATATTGATCCATATGAATATGTTATGTGTTCAGAGTGTCATCAAGGTGGAGATGATGGCCTCATGCTACTCTGTGATATCTGTGATTCCCCTGCACACACATATTGTGTTGGTTTGGGGCGGGAAGTTCCTGAAGGTAATTGGTATTGTGATGGATGTAGACCAGTTGCTTTGGGATCTTCAAGCTCCCAAGTTCAAGAAGGTGTGGCTGATCCAAGGGTATCGGTCCAGAGCCATCCTATTAGACCACCCCCTGCTCTACATGTACGAGAAAGTATAGACCTCAACTTGATTTCATCACCCCGTGCGGCTTTTAATCAAGGTTTTGGGCATCTTCCTTCTTCAAGATTTAGTGGCAGAAGTGTTGAAGGAGCTTCTCCCGTATCTGGAGGGGCACCAACTTTATCAGAGAGACGCTGGATACACCGTCAGATTCAACAACTACTTTCAATAGATAGGATGGCTTCTTCACCTGGCAGAACCAATGGTGTTTCAGCTACCAGTTCAACTAGTAACTTATATAGCTCTCAAATTGATCAAAGTAGGGGAACTGCCACCCTGCATGCAAGGACACAGGATGTGGGAACATCATACCACACATTTTTTGACGAGAGATTATGCAACAATTCCTCTCCATTAATGCAGAATGGGGCATTATGGCCTGGACTTATGGGGACAACCCCAGTACCAGATTGTGAACTAGCTCATCAGTTCAGTAGATCAAACATTGTTCCTGATAGTGGCTTATCCCCTGCTATCAGAGAAGAAAGTAACTTTCACATTGCAAAGGAGCAATTGCAGTCAATGGTTAAAAGCCACTTGAAGAACTTGTCTCAAAATATTGATTTAGGCCACAATACTATCAAGGATATCGCAAGGAGTTCTATGCACACCATACTAGCAGCTTGTGATCTTGAGCACCTGAAGAGTGAAGTTTGCACTGTGCCTCCTCCATCTGCCTGTCCGCATATGGAGCTAATAGCTAGTGGGCAAACGAGTCTGATTAAAGGTTGCTGCTCATCTTGCTTTGATTCTTTTGTAGGAGATGTGGTGAAGAGGGTTTTGGACACAAGAGTTTCGTCACAGTGGTTACGATTAGGTCTTTAG 2631 0.4439 MVRGGRFSGKRNFRKRVRSKEGGSDDSDEDYVVSDEGREASDYYCSSLDGCASEEGFDSFMEEEEEQFRRVRSINRSKSKKGIAGRRKNGSKSSHRRGRITYAEEEDVEEEEEEEEEFEDEEEEDEDEEEYKEEEEEEESQEARNFKRSKAKNGVCGKKKRAGKISPKRGRKIRAEQLEEEEEEEEEEKQVEEEEEEKVERSGAEEEEPEGDRDGEDEDFEYDDEDDEFLPEEEEYSDEEEMGGRNKKNEGVKMEKKVLQKKRASVVSTRGRKRRSSRASKKPLGNKRRKNGRLRKKEKCEDEDNFMDNGTTIGTTTGRKRGQKRRRVLLSDSDYASSGSSDFEFTISEEEREQVREAKRLCGNLRNNLRSSSHPINKEAGVHEDQHRQRKPPARKGKEKIEEPQGRKGKEKVEDLKSEKGKQTCGICLSEEDKRRVRGVLNCCTHFFCFACIMEWAKVESRCPLCKQRFKTISKPARSTTGIDLREVVIQVPERDQVYQPSEEELRSYIDPYEYVMCSECHQGGDDGLMLLCDICDSPAHTYCVGLGREVPEGNWYCDGCRPVALGSSSSQVQEGVADPRVSVQSHPIRPPPALHVRESIDLNLISSPRAAFNQGFGHLPSSRFSGRSVEGASPVSGGAPTLSERRWIHRQIQQLLSIDRMASSPGRTNGVSATSSTSNLYSSQIDQSRGTATLHARTQDVGTSYHTFFDERLCNNSSPLMQNGALWPGLMGTTPVPDCELAHQFSRSNIVPDSGLSPAIREESNFHIAKEQLQSMVKSHLKNLSQNIDLGHNTIKDIARSSMHTILAACDLEHLKSEVCTVPPPSACPHMELIASGQTSLIKGCCSSCFDSFVGDVVKRVLDTRVSSQWLRLGL* 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1365 876 SMART PHD_3 517 562 IPR001965 -
Gso10g1365 876 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 489 565 IPR013083 -
Gso10g1365 876 Coils Coil 168 202 - -
Gso10g1365 876 ProSiteProfiles Zinc finger PHD-type profile. 515 564 IPR019787 -
Gso10g1365 876 PANTHER F18C1.6 PROTEIN 125 865 - -
Gso10g1365 876 PANTHER F18C1.6 PROTEIN 1 171 - -
Gso10g1365 876 ProSitePatterns Zinc finger RING-type signature. 444 453 IPR017907 -
Gso10g1365 876 MobiDBLite consensus disorder prediction 266 294 - -
Gso10g1365 876 PANTHER F18C1.6 PROTEIN 125 865 - -
Gso10g1365 876 PANTHER F18C1.6 PROTEIN 1 171 - -
Gso10g1365 876 MobiDBLite consensus disorder prediction 240 262 - -
Gso10g1365 876 MobiDBLite consensus disorder prediction 105 140 - -
Gso10g1365 876 Coils Coil 101 144 - -
Gso10g1365 876 Coils Coil 348 368 - -
Gso10g1365 876 SUPERFAMILY RING/U-box 424 473 - -
Gso10g1365 876 MobiDBLite consensus disorder prediction 1 40 - -
Gso10g1365 876 SUPERFAMILY FYVE/PHD zinc finger 487 563 IPR011011 -
Gso10g1365 876 SMART ring_2 425 466 IPR001841 -
Gso10g1365 876 Pfam PHD-finger 517 563 IPR019787 -
Gso10g1365 876 MobiDBLite consensus disorder prediction 179 239 - -
Gso10g1365 876 MobiDBLite consensus disorder prediction 663 683 - -
Gso10g1365 876 MobiDBLite consensus disorder prediction 377 415 - -
Gso10g1365 876 MobiDBLite consensus disorder prediction 74 95 - -
Gso10g1365 876 MobiDBLite consensus disorder prediction 366 415 - -
Gso10g1365 876 MobiDBLite consensus disorder prediction 151 168 - -
Gso10g1365 876 ProSiteProfiles Zinc finger RING-type profile. 425 467 IPR001841 -
Gso10g1365 876 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 403 488 IPR013083 -
Gso10g1365 876 MobiDBLite consensus disorder prediction 61 343 - -
Gso10g1365 876 CDD RING-HC_Topors 425 467 - -
Gso10g1365 876 Pfam Ring finger domain 424 467 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1365 Gso-Chr10 40073767 40077854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1365 423 470 C3H Transcription Factor Family AT2G39100 41.667 2.18e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gso10g1365 PHD 6.6e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1365 - - gmx:100791422 1473.37