Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1363 ATGGCGACGAGAAATCGCACTCTGCTTTTCAGAAAGCACAGAGATGCGTTGAAGAGTGTTCGAATTCCCTCATTCTCTTCGGCGCCGTCCACCGCTTCCGGCGCCGGCGGTGGCCCCGTCATCGAATTGGCCACCACTTCATTTCTCAATTCCAATCGCTCTTACACTCCGATCAGTACCGATGATCCCGGCAATTCAAGGGGTCCAAATGCAATTACTGTGGGGCTACCTCCGGTGTGGGTGGATTTATCAGAAGAAATAGCAGCAAATGTGCAACGTGCGCGCACAAAAATGGGAGAGTTGGCGAAGGCTCATTCAAAGGCTTTGATGCCGTCATTTGGAGATGGTAAGGAAGACCAACGAGCTATTGAGACTCTAACACATGAGATAACTGACTTAATAAAGAAGTCGGAGAAGAGACTGCGGAGACTTTCTGCTACTGGGCCTTCTGAGGATTCCAATGTCAGGAAAAATGTGCAGCGCTCTCTTGCTACTGACCTTCAGAACCTCTCTGTTGAGCTCCGCAAGAAACAATCAACTTATTTAAAGCGCCTTAGACAGCAAAAAGAGGGTCAAGATGGAGTTGATCTAGAGATGTTAAATGGAAGTAAATCCAAATATGAAGATGATGACTTGGATAATATGGTATTTAATGAGCATCAAATGGCCAAGCTGAAAAAAAGTGAAGCATTCACAATAGAAAGAGAAAAAGAAATCCAACAGGTTGTGGAATCTGTGAACGAGCTTGCTCAGATTATGAAGGATTTATCAGTACTAGTCATAGACCAGGGAACCATTGTCGATAGAATAGACTACAACATTCAGAATGTTGCAACCACAGTTGAGGATGGCCTTAAACAGCTGCAGAAGGCAGAGAGAACTCAGAAAAAGGGAGGCATGGTAATGTGTGCTACTGTGCTTCTCATCATGTGCTTCGTAATGTTGGTTCTCTTAATCATTAAGGAAATTATTTTGTGA 978 0.4438 MATRNRTLLFRKHRDALKSVRIPSFSSAPSTASGAGGGPVIELATTSFLNSNRSYTPISTDDPGNSRGPNAITVGLPPVWVDLSEEIAANVQRARTKMGELAKAHSKALMPSFGDGKEDQRAIETLTHEITDLIKKSEKRLRRLSATGPSEDSNVRKNVQRSLATDLQNLSVELRKKQSTYLKRLRQQKEGQDGVDLEMLNGSKSKYEDDDLDNMVFNEHQMAKLKKSEAFTIEREKEIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVEDGLKQLQKAERTQKKGGMVMCATVLLIMCFVMLVLLIIKEIIL* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1363 325 CDD SNARE_syntaxin16 234 290 - -
Gso10g1363 325 PANTHER TARGET SNARE COILED-COIL-LIKE DOMAIN-CONTAINING PROTEIN-RELATED 1 320 - -
Gso10g1363 325 Gene3D - 78 283 - -
Gso10g1363 325 ProSitePatterns Syntaxin / epimorphin family signature. 235 274 IPR006012 GO:0005484|GO:0006886|GO:0016020
Gso10g1363 325 SMART tSNARE_6 224 291 IPR000727 -
Gso10g1363 325 Pfam SNARE domain 265 317 IPR000727 -
Gso10g1363 325 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 229 291 IPR000727 -
Gso10g1363 325 SUPERFAMILY t-snare proteins 76 284 IPR010989 GO:0016020|GO:0016192
Gso10g1363 325 SMART SynN_4 71 186 IPR006011 GO:0016020
Gso10g1363 325 PANTHER SYNTAXIN 1 320 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1363 Gso-Chr10 40036449 40041556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1363 1 314 SNARE and Associated Proteins AT3G05710 75.926 1.92e-177 492
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1363 K08489 - gmx:100789659 609.372