Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1361 ATGTCGTATCGCCCAAGCGGGAACTCCAGGACCGAGGTCCGCCGGAACCGGTACAAGGTGGCGGTGGACGCGGAGGAAGGTCGGAGACGGCGAGAGGACACGATGGTGGAGATCCGCAAGAACCGCAGAGAAGAGAGTTTGCAGAAGAAGAGGCGCGAGGGGCTCCAACCTCAGCAGATGCCTGCGTCCGTTCACTCTAGTTTGGTTGAGAAGAAGTTGGAACATCTACCATCGATGGTTACTGGTGTTTGGACTGATGATAATAACCTGCAGCTCGAGGCGACGACGCAGTTTCGGAAGCTGCTTTCGATTGAACGTAGTCCACCGATTGAGGAGGTTATACAGACTGGTGTGGTTTCTCGATTTGTTGAGTTTCTCATGAGGGAAGACTTTCCGCAGTTGCAGTTTGAGGCAGCTTGGGCTTTGACAAATATAGCTTCTGGAACGTCTGAAAACACAAAGGTTGTGATTGATCACGGGGCTGTCCCAATTTTCGTGAAGCTACTTGCTTCTCCTAGTGATGATGTCCGCGAACAGGCAGTGTGGGCATTAGGAAATGTCGCTGGGGATTCGCCTAGATGTCGTGATCTTGTTCTAAGTCATGGGGCTTTGCTTCCTTTGTTGGCACAATTAAATGAACATGCGAAGCTTTCTATGCTTAGAAATGCTACCTGGACACTTTCAAACTTCTGCAGGGGCAAGCCACAGCCTCCTTTTGATCAGGTTAAACCTGCACTTCCTGCTCTTGCCCGTCTTATCCATTCGAACGATGAAGAAGTTTTGACTGATGCATGTTGGGCACTGTCATATCTTTCTGATGGTACAAATGATAAAATTCAAGCTGTAATTGAAGCTGGTGTTTGTCCCCGACTTGTTGAGCTGCTGCTGCACCCATCCCCTTCAGTGCTAATTCCTGCTCTTCGAACTGTTGGAAATATTGTCACTGGAGATGATATGCAGACACAGGTTATCATCAATCACCAGGCTCTTCCTTGCCTTCTGAATCTGTTGACCAATAATTATAAAAAAAGCATCAAGAAGGAAGCTTGTTGGACCATATCAAACATCACAGCTGGTAATAAACAGCAGATTCAGGCTGTGATTGAGGCTAATCTAATTGCTCCTTTGGTCAATCTGCTTCAAAATGCTGAGTTTGATATCAAGAAAGAAGCTGCTTGGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAAGTTCCTAGTAAGTCAAGGGTGTATCAAACCCTTGTGTGATCTTCTCATCTGTCCTGATCCTAGGATTGTGACAGTTTGTCTGGAAGGCCTTGAAAACATCTTGAAGGTGGGAGAAGCTGATAAAAATATAGGCAATACTGGTGATGTGAATCTATATGCCCAAATGATTGATGAAGCTGAGGGGCTGGAGAAAATTGAGAACCTCCAGAGTCATGACAACACAGAGATTTATGAAAAGGCGGTCAAGATTCTTGAGACATACTGGTTGGAGGAGGAAGATGAGACTATGCCTCCAGGGGATGCTTCTCAGTCAGGGTTCAACTTTGGTAGCAGTGACGCTCCTACTGTGCCATCCGGTGGATTCAACTTTAATTAG 1599 0.4653 MSYRPSGNSRTEVRRNRYKVAVDAEEGRRRREDTMVEIRKNRREESLQKKRREGLQPQQMPASVHSSLVEKKLEHLPSMVTGVWTDDNNLQLEATTQFRKLLSIERSPPIEEVIQTGVVSRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDMQTQVIINHQALPCLLNLLTNNYKKSIKKEACWTISNITAGNKQQIQAVIEANLIAPLVNLLQNAEFDIKKEAAWAISNATSGGSHEQIKFLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKNIGNTGDVNLYAQMIDEAEGLEKIENLQSHDNTEIYEKAVKILETYWLEEEDETMPPGDASQSGFNFGSSDAPTVPSGGFNFN* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1361 532 SUPERFAMILY ARM repeat 14 501 IPR016024 -
Gso10g1361 532 Pfam Importin beta binding domain 14 96 IPR002652 GO:0006606|GO:0061608
Gso10g1361 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 160 202 IPR000225 GO:0005515
Gso10g1361 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 117 160 IPR000225 GO:0005515
Gso10g1361 532 Gene3D - 12 52 IPR036975 GO:0006606
Gso10g1361 532 Pfam Atypical Arm repeat 458 504 IPR032413 -
Gso10g1361 532 SMART arm_5 190 232 IPR000225 GO:0005515
Gso10g1361 532 SMART arm_5 360 400 IPR000225 GO:0005515
Gso10g1361 532 SMART arm_5 403 443 IPR000225 GO:0005515
Gso10g1361 532 SMART arm_5 275 315 IPR000225 GO:0005515
Gso10g1361 532 SMART arm_5 149 189 IPR000225 GO:0005515
Gso10g1361 532 SMART arm_5 234 273 IPR000225 GO:0005515
Gso10g1361 532 SMART arm_5 106 147 IPR000225 GO:0005515
Gso10g1361 532 SMART arm_5 317 358 IPR000225 GO:0005515
Gso10g1361 532 MobiDBLite consensus disorder prediction 23 62 - -
Gso10g1361 532 MobiDBLite consensus disorder prediction 513 532 - -
Gso10g1361 532 MobiDBLite consensus disorder prediction 23 52 - -
Gso10g1361 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 244 286 IPR000225 GO:0005515
Gso10g1361 532 Gene3D - 74 497 IPR011989 -
Gso10g1361 532 ProSiteProfiles IBB domain profile. 1 60 IPR002652 GO:0006606|GO:0061608
Gso10g1361 532 PANTHER IMPORTIN SUBUNIT ALPHA 4 522 - -
Gso10g1361 532 Pfam Armadillo/beta-catenin-like repeat 276 314 IPR000225 GO:0005515
Gso10g1361 532 Pfam Armadillo/beta-catenin-like repeat 404 441 IPR000225 GO:0005515
Gso10g1361 532 Pfam Armadillo/beta-catenin-like repeat 191 232 IPR000225 GO:0005515
Gso10g1361 532 Pfam Armadillo/beta-catenin-like repeat 245 272 IPR000225 GO:0005515
Gso10g1361 532 Pfam Armadillo/beta-catenin-like repeat 360 399 IPR000225 GO:0005515
Gso10g1361 532 Pfam Armadillo/beta-catenin-like repeat 107 147 IPR000225 GO:0005515
Gso10g1361 532 Pfam Armadillo/beta-catenin-like repeat 149 188 IPR000225 GO:0005515
Gso10g1361 532 Pfam Armadillo/beta-catenin-like repeat 318 358 IPR000225 GO:0005515
Gso10g1361 532 PIRSF Importin_alpha 5 531 IPR024931 GO:0005737|GO:0006606|GO:0061608
Gso10g1361 532 PANTHER IMPORTIN ALPHA 4 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1361 Gso-Chr10 40025024 40030146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1361 153 422 U-box Gene Family AT1G23030 22.963 2.70e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1361 K15042 - gmx:100789135 1062.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1937 19 48061103 48067068 Gso10g1361 10 40025024 40030146 PCT
Gso3g1978 3 45279514 45284947 Gso10g1361 10 40025024 40030146 PCT
Gso10g1361 10 40025024 40030146 Gso19g1937 19 48061103 48067068 PCT
Gso10g1361 10 40025024 40030146 Gso3g1978 3 45279514 45284947 PCT