Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1358 ATGGGAAGCAGTAGCAGGAAGAAGAACCAAGATCTGGAGTTGGAGAAAGTTCGCTTAATCAGTTTAGCCCTCGAATTTGGCTTCGACGAATCCTCCGCCAACAAATGCCTCGACCGTCTCATCGCTCTCTACGGCGAAGACGGTCGCGATTTCATCACCGTCGAGCACTGCGGCGACGATTTTCTCGCGGCGCTGGCGGAGTCGATGCAGACCGAGGATTGGGATGACCAGCAGGAAATGGAGTCGCAAGCGTGTGGAACATTGACGCACGTACTCGACAAAACCGTTGACACGTGTGCCGATGCAGATAATGACGATGCTTCGAGAAGCTTCTTCGTTGACATTGTTGACGACTCGCCTCAACCGCAGAGACGCAAAGGCAAAAGCCACACTAATGTAGTGGAGTTGGATTCGAGTGACGACGAGGATATGCACTGTAGTGTTTCGAGGGAAAAACCTACGGATTACAGAAGTGGCATTACTCAAGGGTCAGTTTCATCAACTTCCAGCAAAATGCAATCCTCCTTTGCATCAAGGGATACAAGCAGTAGTCCCACTTATGAAGAATTGCAAGCACTAGATGATATTGAACTGGCCAATGTTGTTATCTTTGGTAATAGGACGTTTCGACCATTGCAGCATCAAGCATGTAAAGCAGCTTTGGCAAAGCAAGATTCTTTTATTCTTATGCCTACTGGGGGCGGTAAATCTCTTTGCTATCAGCTTCCAGCTACTCTTCAACCAGGTGTTACAGTAGTTGTATCTCCATTACTTTCACTCATTCAGGACCAGATTATAACACTAAACCTCAAGTTCGGAATACCTTCTACTTTCTTAAATTCTCAACAAACTGCTTCCCAGGTCACAGCTGTGCTCCAAGAGCTAAGAAAAGACAAACCATCATGCAAACTTTTGTATGTGACACCTGAGAGAATTGCTGGCAACCAATCGTTTCTTGAGATTCTAAAATTCATGCATCAGAAGGGACAGCTAGCAGGTTTTGTTGTTGATGAGGCACATTGTGTTAGCCAATGGGGACATGATTTTCGGCCTGATTATCGGGGATTGGGATCTCTTAAGCTACACTTTCCAGATGTACCTGTCATGGCATTGACTGCCACTGCAACGCATGCTGTTCGTGAGGACATATTGAAGGCTTTAAGAATTCCCCATGCACTTGTTCTTGAAAGAAGCTTTGACAGACCAAATTTGAAATATGAAGTGATTGCTAAGACAAAGGAGCCACTAAAGCAGCTAGGACAGTTACTAATTGATCGCTTCAGGAATCAATGTGGAATTGTTTACTGCCTTTCAAAAAGTGAATGTGTTGAGGTCTCCAAATTTTTGAATGAGAAATGCAAGATCAAAACAGTGTATTATCATGCTGGCTTGGCTGCCCGACAGAGAGTAGCCGTTCAAAAAAAATGGTATGATGGAGAGGTCCATATTGTATGTGCAACTATTGCTTTTGGAATGGGGATAGACAAACCTGATGTTCGCTTTGTCATTCACAATACAATGTCAAAATCAATCGAAAGCTATTATCAAGAATCTGGAAGGGCTGGAAGAGATAATTTTCCTTCAGTTTGCATTGCCCTATACCAAAAGAAGGATTTTAGTAGAGTTGTATGCATGATAAGAAATGGCCAAGGATATAAAAAGGAAAGTTTTAAGACAGCAATGGCTCAAGCCAAAAAGATGCAAGAGTACTGTGAAATTAAGGCTGAATGCCGGAGACAAACTTTACTCAAACATTTTGGAGAATCTTTTGATAGAAAAGACTGCAAGTATGGATCTAGCCCCTGTGATAACTGTCTCAAGAATGTATTGTGA 1833 0.4315 MGSSSRKKNQDLELEKVRLISLALEFGFDESSANKCLDRLIALYGEDGRDFITVEHCGDDFLAALAESMQTEDWDDQQEMESQACGTLTHVLDKTVDTCADADNDDASRSFFVDIVDDSPQPQRRKGKSHTNVVELDSSDDEDMHCSVSREKPTDYRSGITQGSVSSTSSKMQSSFASRDTSSSPTYEELQALDDIELANVVIFGNRTFRPLQHQACKAALAKQDSFILMPTGGGKSLCYQLPATLQPGVTVVVSPLLSLIQDQIITLNLKFGIPSTFLNSQQTASQVTAVLQELRKDKPSCKLLYVTPERIAGNQSFLEILKFMHQKGQLAGFVVDEAHCVSQWGHDFRPDYRGLGSLKLHFPDVPVMALTATATHAVREDILKALRIPHALVLERSFDRPNLKYEVIAKTKEPLKQLGQLLIDRFRNQCGIVYCLSKSECVEVSKFLNEKCKIKTVYYHAGLAARQRVAVQKKWYDGEVHIVCATIAFGMGIDKPDVRFVIHNTMSKSIESYYQESGRAGRDNFPSVCIALYQKKDFSRVVCMIRNGQGYKKESFKTAMAQAKKMQEYCEIKAECRRQTLLKHFGESFDRKDCKYGSSPCDNCLKNVL* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1358 610 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 248 546 IPR027417 -
Gso10g1358 610 CDD SF2_C_RecQ 401 534 - -
Gso10g1358 610 SMART helicmild6 443 525 IPR001650 -
Gso10g1358 610 Gene3D - 401 609 IPR027417 -
Gso10g1358 610 Gene3D - 164 400 IPR027417 -
Gso10g1358 610 MobiDBLite consensus disorder prediction 116 184 - -
Gso10g1358 610 MobiDBLite consensus disorder prediction 154 184 - -
Gso10g1358 610 MobiDBLite consensus disorder prediction 119 152 - -
Gso10g1358 610 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 217 393 IPR014001 -
Gso10g1358 610 PANTHER BLOOM SYNDROME PROTEIN 32 607 - -
Gso10g1358 610 PANTHER DNA HELICASE RECQ FAMILY MEMBER 32 607 - -
Gso10g1358 610 Pfam RecQ zinc-binding 537 606 IPR032284 -
Gso10g1358 610 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 332 341 IPR002464 -
Gso10g1358 610 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 418 573 IPR001650 -
Gso10g1358 610 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 203 608 IPR004589 GO:0004386|GO:0006310
Gso10g1358 610 SMART ultradead3 205 409 IPR014001 -
Gso10g1358 610 Pfam DEAD/DEAH box helicase 211 379 IPR011545 GO:0003676|GO:0005524
Gso10g1358 610 CDD DEXHc_RecQ 203 400 - -
Gso10g1358 610 Pfam Helicase conserved C-terminal domain 417 524 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1358 Gso-Chr10 39977325 39983372 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1358 334 523 Eukaryotic Initiation Factors Gene Family AT5G11170 27.041 1.30e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1358 K10899 - gmx:100806070 1207.97