Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1357 ATGGAGATCCAGAAAAAAGGTTTCAAGGGAAGCTTCCTTAGCTTCTTTGACTGGAATGGCAAATCTCAAAAGAAGCTGCTTTGTGACAGGCCTATCTTACCTGATGTTTCAAAGCAAGGAAAGGAAAACATGGACAGCATGCCAAAGTCACAGGAAAATAGGATAAAAATGGATGACAATGGAGTAAATCCTAGCAATAATGCAAGTTGTGGTTTTGATTGTGCCATATCAATTAATAGTGATGAAGGGTATGGGACTAAAGCCCCAGGGTTAGTAGCCAGACTTATGGGTTTGGATTCGTTGCCAGTTTTAACTGTCTCTGAGCTCTCCTCATCATCCACTTCATTATATGGCTCCAACTCTCTTGGATCTTCTCATTCTCATGATGAGGATGTTCTTCACTCAATGGTTGACTATGGTTGCCCTGTGGATCCCATAAATATGCGACTTAAGCCGGAGAAGTCTTCTTGGGGTGCCATGCAATCAAGGGCTTTGAAAGTGGGAAATCCGTCAATGAAGAGATTTCAGACTGAAATGTTGCCTCCAAAGTCTGCTAAACCCATTCCAGTTTCTCACAACAAACTTTTGTCTCCTATCAAGAGCCCTGCTTTTATGCAACCTAAGCATGCAGCTCATATAATGGAGGCAGCTACCAAAATAATTGAGGCAAGTCCCCAGCCATGTAGGAGGAATAAAATGTCTTCATATGGACCTTCATCTGTTTCATTAAGAATTCTTGATCTGAAAGAGAAATTGGAAGCTGCACAATATGAATCCAAGTTCATGGATACACACACTGCTAACCCTCTGAATGGCAAGCCTAGTGAGAGGAGAAACAATTTATATAAATCCACTTTAAGTTTCAAAGGTTCAAGGCATTCAGTAAAGAACAGTTCTTGTCAGTTGGCAAGCAAAGGAAAATCTGCTTCACTTGCAATGCCATCTAAAACCAATGCTCAGAGCCGTGATGAATTGACTTTGAATGGGAATAGGAGATATATGAGGCAGAAAGAACATAACAATATAAAATCAAACCAGTTGCCCAGGAGCCAGAAGAAACAAATTGCAGACAGGGGCAGGGTAATGCAGCAGAGAGCTTGTACAAGCCAGAATAGAAATGTGCTTGGAAAGAATAATCAAAAGCAGAATAGTGTAACCAACAAAGGTAGTTCAGCTTCAAAGATGGACTCTAATAAGCCAACACAAACTTGGTCTTCAGAAAGTTCTACTGGAGCAAAGAAGACTAAAAAAAAGGTTTCTGTAAATGCCAACATTGAGCCCAAAAGGTTTGGCACAAGGATCACTGATACCATAAAGGAGTTTCCAGTTTCCAAAAGGAAGGGTATTTCCCAAAAGAAAAACTATAGCAGTTGCGATATTCACAATAAGCCAAGAGGTTCTGATAGTGCAGCTAATACTTATGAAAACATGCCCATAAAATGCAATATTACGACTGATGGAAGTATTGACCAGGATGCATTTAGCATGAAAGGAAGCAATGGTGTGATTTCATTTACATTTACATCTCCCTTGAGAAGAAACTTGCCCGAGTTACAGTCCTCTAGCGAGCAAGCGATGGGAACAAGGAACAAAATTGATGTCAATTCTTGTAGTAGTAATGACAAGTTTTATCCTCAAAAGTCATCATTTTCTCCTCCCAGGTTACATGTAATAGATGGTGATGCTTTAAGTGTTCTTTTGGAGAAAAAACTGCAAGAATTGACATCTAGAATTAACCCACCTCAGTGCTCCCTCACGACAGAAGGGTCTTCTACTGGTTTAAGATCTAGTTTGGAAGACAAATTTCGAAGTGTGTTAAGCACCACAGTAAGGGAACAAGACATAAGCTTTTACAATCAATTGGACAGCGTGCATGACAATTGTTCTTCAAGTGATATTGTGGTGCTTAGCATGAATCAGCAACTGCAGACATCAGAATCAATGGAAGAGCCTAGCTGTCGCAGCAACAGTGAAAGCAAAAATGGAAGTTACTTAGATAGTGCATATGAATGGTCTGAGCAAAGCTCTTCCATAGTGATGGGGGATAACATGGCCAGTGAACAATCAAGTGTAATGTCAAATTCGGCCGAATTTACAAGATCAGCGAGGAACATGGAACTTGAATATGTAAAGGATATATTCAGCAATGCAGAGTTGATGACAGAAGAATTTGTGGTGGGTGAGACAGACAAGATCATAATGCCAAATCTCTTTGACAAGTTGGAGAATAAAGGCCTTGGGGCAGAAAACTATGAAGAGTACTCTAAGATTGAGAGGAGGGCTATATTTGACACTGTGAGTGAGTGCCTAGAACTAAGGTGCAGACAAATTTTTGTTGGAAGCTGCAAAGCATGGCCAAAATGGTTGGCTTCAGTTCAGAGGAAGAACTGTTTAGCAGAAGAGTTTTACAAGGAAATACTGAGCTTTAGAAGTATGGAAGAAGAGGTAGAGGTGGATGAACTTGTCAACAAGGACATGAGCACTGGATGGTGTAAATGGCTTGACTTTGAAATTGAAGCCTTTGAGAAGGGTTCAGAACTTGAATTTGATATCCTAACATGTTTGATTAACGAATTGGTTTCTGATTTATTGCATGTTTAA 2601 0.4006 MEIQKKGFKGSFLSFFDWNGKSQKKLLCDRPILPDVSKQGKENMDSMPKSQENRIKMDDNGVNPSNNASCGFDCAISINSDEGYGTKAPGLVARLMGLDSLPVLTVSELSSSSTSLYGSNSLGSSHSHDEDVLHSMVDYGCPVDPINMRLKPEKSSWGAMQSRALKVGNPSMKRFQTEMLPPKSAKPIPVSHNKLLSPIKSPAFMQPKHAAHIMEAATKIIEASPQPCRRNKMSSYGPSSVSLRILDLKEKLEAAQYESKFMDTHTANPLNGKPSERRNNLYKSTLSFKGSRHSVKNSSCQLASKGKSASLAMPSKTNAQSRDELTLNGNRRYMRQKEHNNIKSNQLPRSQKKQIADRGRVMQQRACTSQNRNVLGKNNQKQNSVTNKGSSASKMDSNKPTQTWSSESSTGAKKTKKKVSVNANIEPKRFGTRITDTIKEFPVSKRKGISQKKNYSSCDIHNKPRGSDSAANTYENMPIKCNITTDGSIDQDAFSMKGSNGVISFTFTSPLRRNLPELQSSSEQAMGTRNKIDVNSCSSNDKFYPQKSSFSPPRLHVIDGDALSVLLEKKLQELTSRINPPQCSLTTEGSSTGLRSSLEDKFRSVLSTTVREQDISFYNQLDSVHDNCSSSDIVVLSMNQQLQTSESMEEPSCRSNSESKNGSYLDSAYEWSEQSSSIVMGDNMASEQSSVMSNSAEFTRSARNMELEYVKDIFSNAELMTEEFVVGETDKIIMPNLFDKLENKGLGAENYEEYSKIERRAIFDTVSECLELRCRQIFVGSCKAWPKWLASVQRKNCLAEEFYKEILSFRSMEEEVEVDELVNKDMSTGWCKWLDFEIEAFEKGSELEFDILTCLINELVSDLLHV* 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1357 866 Pfam DUF761-associated sequence motif 80 102 IPR032795 -
Gso10g1357 866 Pfam Domain of unknown function (DUF4378) 706 858 IPR025486 -
Gso10g1357 866 MobiDBLite consensus disorder prediction 288 420 - -
Gso10g1357 866 MobiDBLite consensus disorder prediction 288 327 - -
Gso10g1357 866 MobiDBLite consensus disorder prediction 641 662 - -
Gso10g1357 866 MobiDBLite consensus disorder prediction 363 410 - -
Gso10g1357 866 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 1 661 - -
Gso10g1357 866 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 664 866 - -
Gso10g1357 866 PANTHER DUF4378 DOMAIN PROTEIN 1 661 - -
Gso10g1357 866 PANTHER DUF4378 DOMAIN PROTEIN 664 866 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1357 Gso-Chr10 39958191 39962690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1357 3 864 TRM (TON1 Recruiting Motif) Superfamily AT5G26910 32.230 2.11e-95 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1357 - - gmx:102665160 1673.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1933 19 48021348 48026033 Gso10g1357 10 39958191 39962690 PCT
Gso3g1973 3 45242942 45247589 Gso10g1357 10 39958191 39962690 PCT
Gso10g1357 10 39958191 39962690 Gso19g1933 19 48021348 48026033 PCT
Gso10g1357 10 39958191 39962690 Gso3g1973 3 45242942 45247589 PCT