Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1346 ATGGTTGGAGCACCACCAGAACTGGCTTCACTTCTTGAAGAAATAGCCCGTGAAAGCTACCCAACGGATGCTCTTCGTGAGATAGGAGATGATCCTGAACTTGACGAATTCATGGAGTCATACTGCGAAGTTCTTCATAGATACAAGCAGGAGTTGTCGAAGCCATTCAACGAAGCGACCTTGTTTTTGTGCAGTATCGAATCACAACTCAGCAATCTTTGCAAGGGAACACTGACAATGCCATTGGATAACAACCACTCAGATGAGGCCGCTGGAACATCAGAGGATGAATTGAGTTGGGAGAAGGTGGAAGCAGTTGAAGGTCACGAATCTTCTGGCCCACGTCCAGGTGATCAAGAGCTTAAAGAAATGCTCCTTCGTAAGTATGGTGGTTATCTTAGCAGCTTGAAAAAGGAATTTCTTAAGAAAAGGAAAAAGGGTAAGCTACCAAAGGATGCAAGGATGGTACTCATGGACTGGTGGAACACCCACTATCGGTGGCCTTATCCTACGGAGGAGGAGAAAGTGCAGCTATCAGAAATGACTGGACTTGATCAAAAGCAGATCAATAATTGGTTCATCAATCAAAGAAAACGGCATTGGAAACCATCAGAGGACATGCGATTTGCCATTATGGATGGTGTAAGTGGCAGTGGCTTTGGAGGACCTATCTAA 675 0.4504 MVGAPPELASLLEEIARESYPTDALREIGDDPELDEFMESYCEVLHRYKQELSKPFNEATLFLCSIESQLSNLCKGTLTMPLDNNHSDEAAGTSEDELSWEKVEAVEGHESSGPRPGDQELKEMLLRKYGGYLSSLKKEFLKKRKKGKLPKDARMVLMDWWNTHYRWPYPTEEEKVQLSEMTGLDQKQINNWFINQRKRHWKPSEDMRFAIMDGVSGSGFGGPI* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1346 224 MobiDBLite consensus disorder prediction 85 119 - -
Gso10g1346 224 Pfam ELK domain 120 141 IPR005539 GO:0003677
Gso10g1346 224 ProSiteProfiles ELK domain profile. 120 140 IPR005539 GO:0003677
Gso10g1346 224 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 10 2 214 - -
Gso10g1346 224 Pfam KNOX2 domain 28 74 IPR005541 GO:0003677|GO:0005634
Gso10g1346 224 Pfam Homeobox KN domain 160 199 IPR008422 GO:0003677|GO:0006355
Gso10g1346 224 MobiDBLite consensus disorder prediction 89 119 - -
Gso10g1346 224 CDD homeodomain 152 204 IPR001356 GO:0003677
Gso10g1346 224 ProSiteProfiles 'Homeobox' domain profile. 140 203 IPR001356 GO:0003677
Gso10g1346 224 SMART ELK_2 120 141 IPR005539 GO:0003677
Gso10g1346 224 SMART KNOX2_2 24 75 IPR005541 GO:0003677|GO:0005634
Gso10g1346 224 SMART HOX_1 142 207 IPR001356 GO:0003677
Gso10g1346 224 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 2 214 - -
Gso10g1346 224 SUPERFAMILY Homeodomain-like 142 216 IPR009057 -
Gso10g1346 224 ProSitePatterns 'Homeobox' domain signature. 178 201 IPR017970 GO:0000981|GO:0006355
Gso10g1346 224 Gene3D - 138 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1346 Gso-Chr10 39835085 39840316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1346 2 220 Homeobox Transcription Factor Family AT1G23380 56.502 6.02e-77 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Gso10g1346 KNOX2 5.8e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1346 - - gmx:100786114 442.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1924 19 47965953 47971698 Gso10g1346 10 39835085 39840316 PCT
Gso3g1963 3 45171957 45178130 Gso10g1346 10 39835085 39840316 PCT
Gso10g1346 10 39835085 39840316 Gso19g1924 19 47965953 47971698 PCT
Gso10g1346 10 39835085 39840316 Gso3g1963 3 45171957 45178130 PCT