Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g1344 ATGGATTTCCAGGGATTCCTAAACGACTTGCAGGATTGGGAACTTTCTAGAAAGGATAAAACACGAGCACAAAAGGAAAATGCTTCATCTTCACAGCTTACTGGATCCGTGGGTGTGGAGAAGGCATCAAAAGGAGATACCATTTCTTTTGATCGTGCAAGAAATTCTCCAGGACAGTATGATTTGTCAAGAATTAATGATCCTTTCAATCGTGTGCATAGTAGTTTTGTTCCTGAAGATGTTCCTGATGCTGTTTCTGAGAAAGATCTGGGTAATGAGTTTTTCAAGCAGAAAAAGTTTAAGGAAGCTAGAGACTGCTATTCAAGGAGCATTGCCTTATCACCAACAGCTGTCGCATATGCAAATAGGGCAATGGCCAATATCAAGCTCAGAAGATTCCAAGAGGCTGAGGATGACTGCACAGAGGCCTTAAATCTTGATGATCGTTACATAAAAGCATACTCACGAAGAGCAACGGCTAGAAAAGAACTTGGAAAAATTAAAGAATCGATGGACGATGCTGCATTTGCCTTGAGGTTGGAACCAAACAATCAAGAAATCAAGAAACAGTATGCTGATGCTAAGTCTTTGTATGAGAAAGATATTCTTCAGAAAGCCTCAGGGGCTCTGAGAAGCACTGTTCAGGGAACTCAAAAATCTCAAAAGTCAGAGGAAAAAATTAATGGAGGCAGCATCCAACCCATTTCACATAGTACTCAAAAGTCTGGACTAGCTGAAGTTAATCATCATAAAAAGGATAATGAACAGCAAATACTTGTTAAAGAATCACTCTTAACAGAGGATGTTGATAGCAGAGAAACAAAAGCCAGAAGCAGGCCTCAATCACAAGGAGGCGATGGCTCTAAAGAAGGTTTGAGTGCAAGCAACAGTTTGGAGCAGAGAAATCACAGCATTACTAAGCTGGAAATGAAAGCATCTGTGCAACAGCTTGCTTCTCGTGCTGCTTCTAGAGTCGTGGCTGAAGCTGCCAAAAATGTAACCCCTCCAACTACAGCTTATCAGTTTGAGGTCTCCTGGAGAGCATTTTCAGGTGATCTTGCTCTGCAGGCTCGTCTATTAAAGGCTATATCTCCCCATGAATTACCGAAAATATTCAAAAATGCCTTATCTTCTGCCATACTAATTGAGATCATCAAGTGTCTTGCATCTTTTTTCACGGAGGACATGGATCTGGTTGTCAGTTATTTGGAGCATTTGACCAAGGTACCAAGATTTGACGTGATTGTAATGTGCCTTTCATCAACAAATAAGGATGACATACGCAAGATCTGGGATGAAGTGTTCAGTAGTGAGGCAACACCAATTGAGTATGCAGAGATTCTGGACAACCTCCGATCAAAGTTCGGCCTTGGACAGTGA 1380 0.4138 MDFQGFLNDLQDWELSRKDKTRAQKENASSSQLTGSVGVEKASKGDTISFDRARNSPGQYDLSRINDPFNRVHSSFVPEDVPDAVSEKDLGNEFFKQKKFKEARDCYSRSIALSPTAVAYANRAMANIKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKIKESMDDAAFALRLEPNNQEIKKQYADAKSLYEKDILQKASGALRSTVQGTQKSQKSEEKINGGSIQPISHSTQKSGLAEVNHHKKDNEQQILVKESLLTEDVDSRETKARSRPQSQGGDGSKEGLSASNSLEQRNHSITKLEMKASVQQLASRAASRVVAEAAKNVTPPTTAYQFEVSWRAFSGDLALQARLLKAISPHELPKIFKNALSSAILIEIIKCLASFFTEDMDLVVSYLEHLTKVPRFDVIVMCLSSTNKDDIRKIWDEVFSSEATPIEYAEILDNLRSKFGLGQ* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g1344 459 Gene3D Tetratricopeptide repeat domain 75 182 IPR011990 GO:0005515
Gso10g1344 459 SMART tpr_5 84 117 IPR019734 GO:0005515
Gso10g1344 459 SMART tpr_5 151 184 IPR019734 GO:0005515
Gso10g1344 459 SMART tpr_5 118 150 IPR019734 GO:0005515
Gso10g1344 459 SUPERFAMILY TPR-like 82 199 IPR011990 GO:0005515
Gso10g1344 459 MobiDBLite consensus disorder prediction 244 258 - -
Gso10g1344 459 MobiDBLite consensus disorder prediction 18 57 - -
Gso10g1344 459 Pfam Potential Monad-binding region of RPAP3 335 424 IPR025986 -
Gso10g1344 459 PANTHER OS05G0129900 PROTEIN 1 457 - -
Gso10g1344 459 MobiDBLite consensus disorder prediction 210 295 - -
Gso10g1344 459 MobiDBLite consensus disorder prediction 280 295 - -
Gso10g1344 459 ProSiteProfiles TPR repeat profile. 84 117 IPR019734 GO:0005515
Gso10g1344 459 MobiDBLite consensus disorder prediction 265 279 - -
Gso10g1344 459 MobiDBLite consensus disorder prediction 210 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g1344 Gso-Chr10 39794122 39799281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g1344 81 154 U-box Gene Family AT3G07370 38.961 1.10e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g1344 K23002 - gmx:100784528 872.463